7RCM image
Deposition Date 2021-07-07
Release Date 2021-09-29
Last Version Date 2024-10-09
Entry Detail
PDB ID:
7RCM
Title:
Crystal Structure of ADP-bound Galactokinase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Galactokinase
Gene (Uniprot):GALK1
Mutagens:K252A, E253A
Chain IDs:A, B
Chain Length:392
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure-Based Optimization of Small Molecule Human Galactokinase Inhibitors.
J.Med.Chem. 64 13551 13571 (2021)
PMID: 34491744 DOI: 10.1021/acs.jmedchem.1c00945

Abstact

Classic galactosemia is a rare disease caused by inherited deficiency of galactose-1 phosphate uridylyltransferase (GALT). Accumulation of galactose-1 phosphate (gal-1P) is thought to be the major cause of the chronic complications associated with this disease, which currently has no treatment. Inhibiting galactokinase (GALK1), the enzyme that generates galactose-1 phosphate, has been proposed as a novel strategy for treating classic galactosemia. Our previous work identified a highly selective unique dihydropyrimidine inhibitor against GALK1. With the determination of a co-crystal structure of this inhibitor with human GALK1, we initiated a structure-based structure-activity relationship (SAR) optimization campaign that yielded novel analogs with potent biochemical inhibition (IC50 < 100 nM). Lead compounds were also able to prevent gal-1P accumulation in patient-derived cells at low micromolar concentrations and have pharmacokinetic properties suitable for evaluation in rodent models of galactosemia.

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Primary Citation of related structures
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