7RB4 image
Deposition Date 2021-07-05
Release Date 2022-04-20
Last Version Date 2024-10-09
Entry Detail
PDB ID:
7RB4
Keywords:
Title:
Crystal structure of Peptono Toxin, a diphtheria toxin homolog, from Seinonella peptonophila
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Diphtheria toxin, C domain
Gene (Uniprot):SAMN05444392_1116
Chain IDs:A
Chain Length:606
Number of Molecules:1
Biological Source:Seinonella peptonophila
Ligand Molecules
Primary Citation
Structures of distant diphtheria toxin homologs reveal functional determinants of an evolutionarily conserved toxin scaffold.
Commun Biol 5 375 375 (2022)
PMID: 35440624 DOI: 10.1038/s42003-022-03333-9

Abstact

Diphtheria toxin (DT) is the archetype for bacterial exotoxins implicated in human diseases and has played a central role in defining the field of toxinology since its discovery in 1888. Despite being one of the most extensively characterized bacterial toxins, the origins and evolutionary adaptation of DT to human hosts remain unknown. Here, we determined the first high-resolution structures of DT homologs outside of the Corynebacterium genus. DT homologs from Streptomyces albireticuli (17% identity to DT) and Seinonella peptonophila (20% identity to DT), despite showing no toxicity toward human cells, display significant structural similarities to DT sharing both the overall Y-shaped architecture of DT as well as the individual folds of each domain. Through a systematic investigation of individual domains, we show that the functional determinants of host range extend beyond an inability to bind cellular receptors; major differences in pH-induced pore-formation and cytosolic release further dictate the delivery of toxic catalytic moieties into cells, thus providing multiple mechanisms for a conserved structural fold to adapt to different hosts. Our work provides structural insights into the expanding DT family of toxins, and highlights key transitions required for host adaptation.

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Chemical

Disease

Primary Citation of related structures
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