7QY7 image
Entry Detail
PDB ID:
7QY7
EMDB ID:
Title:
Proteasome-ZFAND5 Complex Z-A state
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-01-27
Release Date:
2023-02-08
Method Details:
Experimental Method:
Resolution:
4.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:26S protease regulatory subunit 7
Chain IDs:M (auth: A)
Chain Length:376
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S protease regulatory subunit 4
Chain IDs:N (auth: B)
Chain Length:440
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:PSMC5 isoform 15
Chain IDs:O (auth: C)
Chain Length:309
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S protease regulatory subunit 6B
Chain IDs:P (auth: D)
Chain Length:349
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome regulatory subunit 10B
Chain IDs:Q (auth: E)
Chain Length:70
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S protease regulatory subunit 6A
Chain IDs:R (auth: F)
Chain Length:908
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-6
Chain IDs:S (auth: G), GA (auth: g)
Chain Length:245
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-2
Chain IDs:T (auth: H), HA (auth: h)
Chain Length:233
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-4
Chain IDs:U (auth: I), IA (auth: i)
Chain Length:260
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-7
Chain IDs:V (auth: J), JA (auth: j)
Chain Length:247
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-5
Chain IDs:W (auth: K), KA (auth: k)
Chain Length:240
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Isoform Long of Proteasome subunit alpha type-1
Chain IDs:X (auth: L), LA (auth: l)
Chain Length:268
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit alpha type-3
Chain IDs:Y (auth: M), MA (auth: m)
Chain Length:254
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-6
Chain IDs:Z (auth: N), NA (auth: n)
Chain Length:238
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-7
Chain IDs:AA (auth: O), OA (auth: o)
Chain Length:276
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-3
Chain IDs:BA (auth: P), PA (auth: p)
Chain Length:204
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-2
Chain IDs:CA (auth: Q), QA (auth: q)
Chain Length:201
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-5
Chain IDs:DA (auth: R), RA (auth: r)
Chain Length:262
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-1
Chain IDs:EA (auth: S), SA (auth: s)
Chain Length:240
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Proteasome subunit beta type-4
Chain IDs:FA (auth: T), TA (auth: t)
Chain Length:263
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 1
Chain IDs:G (auth: U)
Chain Length:953
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 3
Chain IDs:H (auth: V)
Chain Length:533
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 12
Chain IDs:I (auth: W)
Chain Length:456
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 11
Chain IDs:J (auth: X)
Chain Length:422
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 6
Chain IDs:K (auth: Y)
Chain Length:389
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 7
Chain IDs:L (auth: Z)
Chain Length:324
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 13
Chain IDs:A (auth: a)
Chain Length:376
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 4
Chain IDs:B (auth: b)
Chain Length:440
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 14
Chain IDs:C (auth: c)
Chain Length:309
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 8
Chain IDs:D (auth: d)
Chain Length:349
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome complex subunit SEM1
Chain IDs:E (auth: e)
Chain Length:70
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:26S proteasome non-ATPase regulatory subunit 2
Chain IDs:F (auth: f)
Chain Length:908
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Molecular mechanism for activation of the 26S proteasome by ZFAND5.
Mol.Cell 83 2959 2975.e7 (2023)
PMID: 37595557 DOI: 10.1016/j.molcel.2023.07.023

Abstact

Various hormones, kinases, and stressors (fasting, heat shock) stimulate 26S proteasome activity. To understand how its capacity to degrade ubiquitylated proteins can increase, we studied mouse ZFAND5, which promotes protein degradation during muscle atrophy. Cryo-electron microscopy showed that ZFAND5 induces large conformational changes in the 19S regulatory particle. ZFAND5's AN1 Zn-finger domain interacts with the Rpt5 ATPase and its C terminus with Rpt1 ATPase and Rpn1, a ubiquitin-binding subunit. Upon proteasome binding, ZFAND5 widens the entrance of the substrate translocation channel, yet it associates only transiently with the proteasome. Dissociation of ZFAND5 then stimulates opening of the 20S proteasome gate. Using single-molecule microscopy, we showed that ZFAND5 binds ubiquitylated substrates, prolongs their association with proteasomes, and increases the likelihood that bound substrates undergo degradation, even though ZFAND5 dissociates before substrate deubiquitylation. These changes in proteasome conformation and reaction cycle can explain the accelerated degradation and suggest how other proteasome activators may stimulate proteolysis.

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