7QVK image
Deposition Date 2022-01-21
Release Date 2023-02-01
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7QVK
Keywords:
Title:
NM-02 in complex with HER2-ECD
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Camelus bactrianus (Taxon ID: 9837)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.32
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Receptor tyrosine-protein kinase erbB-2
Gene (Uniprot):ERBB2
Chain IDs:A (auth: AAA)
Chain Length:630
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:NM-02
Chain IDs:B (auth: BBB)
Chain Length:132
Number of Molecules:1
Biological Source:Camelus bactrianus
Ligand Molecules
Primary Citation
Co-crystallisation and humanisation of an anti-HER2 single-domain antibody as a theranostic tool.
Plos One 18 e0288259 e0288259 (2023)
PMID: 37459326 DOI: 10.1371/journal.pone.0288259

Abstact

Human epidermal growth factor receptor-2 (HER2) is a well-recognised biomarker associated with 25% of breast cancers. In most cases, early detection and/or treatment correlates with an increased chance of survival. This study, has identified and characterised a highly specific anti-HER2 single-domain antibody (sdAb), NM-02, as a potential theranostic tool. Complete structural description by X-ray crystallography has revealed a non-overlapping epitope with current anti-HER2 antibodies. To reduce the immunogenicity risk, NM-02 underwent a humanisation process and retained wild type-like binding properties. To further de-risk the progression towards chemistry, manufacturing and control (CMC) we performed full developability profiling revealing favourable thermal and physical biochemical 'drug-like' properties. Finally, the application of the lead humanised NM-02 candidate (variant K) for HER2-specific imaging purposes was demonstrated using breast cancer HER2+/BT474 xenograft mice.

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Primary Citation of related structures