7QJI image
Deposition Date 2021-12-16
Release Date 2022-02-02
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7QJI
Title:
X-Ray Structure of apo-EleNRMT in complex with two Nanobodies at 4.1A
Biological Source:
Source Organism:
Vicugna pacos (Taxon ID: 30538)
Method Details:
Experimental Method:
Resolution:
4.10 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Divalent metal cation transporter
Chain IDs:A, D (auth: E)
Chain Length:438
Number of Molecules:2
Biological Source:Vicugna pacos
Polymer Type:polypeptide(L)
Molecule:Elen-Nanobody-complex
Chain IDs:C (auth: B), F (auth: G)
Chain Length:121
Number of Molecules:2
Biological Source:Vicugna pacos
Polymer Type:polypeptide(L)
Molecule:Elen-Nanobody-complex
Chain IDs:B (auth: C), E (auth: F)
Chain Length:117
Number of Molecules:2
Biological Source:Vicugna pacos
Ligand Molecules
Primary Citation
Structural and functional properties of a magnesium transporter of the SLC11/NRAMP family.
Elife 11 ? ? (2022)
PMID: 35001872 DOI: 10.7554/eLife.74589

Abstact

Members of the ubiquitous SLC11/NRAMP family catalyze the uptake of divalent transition metal ions into cells. They have evolved to efficiently select these trace elements from a large pool of Ca2+ and Mg2+, which are both orders of magnitude more abundant, and to concentrate them in the cytoplasm aided by the cotransport of H+ serving as energy source. In the present study, we have characterized a member of a distant clade of the family found in prokaryotes, termed NRMTs, that were proposed to function as transporters of Mg2+. The protein transports Mg2+ and Mn2+ but not Ca2+ by a mechanism that is not coupled to H+. Structures determined by cryo-EM and X-ray crystallography revealed a generally similar protein architecture compared to classical NRAMPs, with a restructured ion binding site whose increased volume provides suitable interactions with ions that likely have retained much of their hydration shell.

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Primary Citation of related structures