7QJG image
Entry Detail
PDB ID:
7QJG
Keywords:
Title:
EED in complex with PRC2 allosteric inhibitor compound 6
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-12-16
Release Date:
2022-04-13
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Polycomb protein EED
Chain IDs:A, B
Chain Length:366
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone-lysine N-methyltransferase EZH2
Chain IDs:C, D
Chain Length:29
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery of the Clinical Candidate MAK683: An EED-Directed, Allosteric, and Selective PRC2 Inhibitor for the Treatment of Advanced Malignancies.
J.Med.Chem. 65 5317 5333 (2022)
PMID: 35352560 DOI: 10.1021/acs.jmedchem.1c02148

Abstact

Polycomb Repressive Complex 2 (PRC2) plays an important role in transcriptional regulation during animal development and in cell differentiation, and alteration of PRC2 activity has been associated with cancer. On a molecular level, PRC2 catalyzes methylation of histone H3 lysine 27 (H3K27), resulting in mono-, di-, or trimethylated forms of H3K27, of which the trimethylated form H3K27me3 leads to transcriptional repression of polycomb target genes. Previously, we have shown that binding of the low-molecular-weight compound EED226 to the H3K27me3 binding pocket of the regulatory subunit EED can effectively inhibit PRC2 activity in cells and reduce tumor growth in mouse xenograft models. Here, we report the stepwise optimization of the tool compound EED226 toward the potent and selective EED inhibitor MAK683 (compound 22) and its subsequent preclinical characterization. Based on a balanced PK/PD profile, efficacy, and mitigated risk of forming reactive metabolites, MAK683 has been selected for clinical development.

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Primary Citation of related structures