7QIL image
Entry Detail
PDB ID:
7QIL
Keywords:
Title:
Solution NMR structure of halophilic DnaE intein
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-12-15
Release Date:
2022-04-27
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
20
Selection Criteria:
all calculated structures submitted
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DnaE intein
Chain IDs:A
Chain Length:140
Number of Molecules:1
Biological Source:Nostoc
Ligand Molecules
Primary Citation
The NMR structure of the engineered halophilic DnaE intein for segmental isotopic labeling using conditional protein splicing.
J.Magn.Reson. 338 107195 107195 (2022)
PMID: 35398651 DOI: 10.1016/j.jmr.2022.107195

Abstact

Protein trans-splicing catalyzed by split inteins has been used for segmental isotopic labeling of proteins for alleviating the complexity of NMR signals. Whereas inteins spontaneously trigger protein splicing upon protein folding, inteins from extremely halophilic organisms require a high salinity condition to induce protein splicing. We designed and created a salt-inducible intein from the widely used DnaE intein from Nostoc punctiforme by introducing 29 mutations, which required a lower salt concentration than naturally occurring halo-obligate inteins. We determined the NMR solution structure of the engineered salt-inducible DnaE intein in 2 M NaCl, showing the essentially identical three-dimensional structure to the original one, albeit it unfolds without salts. The NMR structure of a halo-obligate intein under high salinity suggests that the stabilization of the active folded conformation is not a mere result of various intramolecular interactions but the subtle energy balance from the complex interactions, including the solvation energy, which involve waters, ions, co-solutes, and protein polypeptide chains.

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