ISDA

Deposition Date 2021-12-14

Release Date 2022-07-13

Last Version Date 2024-07-31

Entry Detail

PDB ID:

7QI4

Keywords:

RIBOSOME

Title:

Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.21 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L32, mitochondrial
Gene (Uniprot):MRPL32
Chain IDs:GB (auth: 0)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYC8 Pfam ID:PF01783

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L33, mitochondrial
Gene (Uniprot):MRPL33
Chain IDs:HB (auth: 1)
Chain Length:65
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O75394 Pfam ID:PF00471

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L34, mitochondrial
Gene (Uniprot):MRPL34
Chain IDs:IB (auth: 2)
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BQ48 Pfam ID:PF00468

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L35, mitochondrial
Gene (Uniprot):MRPL35
Chain IDs:JB (auth: 3)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NZE8 Pfam ID:PF01632

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L36, mitochondrial
Gene (Uniprot):MRPL36
Chain IDs:KB (auth: 4)
Chain Length:103
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9P0J6 Pfam ID:PF00444

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L37, mitochondrial
Gene (Uniprot):MRPL37
Chain IDs:LB (auth: 5)
Chain Length:423
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BZE1 Pfam ID:PF07147

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L38, mitochondrial
Gene (Uniprot):MRPL38
Chain IDs:MB (auth: 6)
Chain Length:380
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96DV4 Pfam ID:PF01161

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L39, mitochondrial
Gene (Uniprot):MRPL39
Chain IDs:NB (auth: 7)
Chain Length:338
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NYK5

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L40, mitochondrial
Gene (Uniprot):MRPL40
Chain IDs:OB (auth: 8)
Chain Length:206
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NQ50 Pfam ID:PF09812

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L41, mitochondrial
Gene (Uniprot):MRPL41
Chain IDs:PB (auth: 9)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8IXM3 Pfam ID:PF09809

Polymer Type:polyribonucleotide
Molecule:16S mitochondrial rRNA
Chain IDs:IA (auth: A)
Chain Length:1558
Number of Molecules:1
Biological Source:Homo sapiens

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S34, mitochondrial
Gene (Uniprot):MRPS34
Chain IDs:AA (auth: A0)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82930 Pfam ID:PF16053

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S35, mitochondrial
Gene (Uniprot):MRPS35
Chain IDs:BA (auth: A1)
Chain Length:323
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82673 Pfam ID:PF10213

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
Gene (Uniprot):CHCHD1
Chain IDs:CA (auth: A2)
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96BP2 Pfam ID:PF06747

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Aurora kinase A-interacting protein
Gene (Uniprot):AURKAIP1
Chain IDs:DA (auth: A3)
Chain Length:199
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NWT8 Pfam ID:PF08213

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Pentatricopeptide repeat domain-containing protein 3, mitochondrial
Gene (Uniprot):PTCD3
Chain IDs:EA (auth: A4)
Chain Length:689
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96EY7 Pfam ID:PF22330, PF13812

Polymer Type:polyribonucleotide
Molecule:12S mitochondrial rRNA
Chain IDs:A (auth: AA)
Chain Length:954
Number of Molecules:1
Biological Source:Homo sapiens

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S2, mitochondrial
Gene (Uniprot):MRPS2
Chain IDs:B (auth: AB)
Chain Length:296
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y399 Pfam ID:PF00318

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S24, mitochondrial
Gene (Uniprot):MRPS24
Chain IDs:C (auth: AC)
Chain Length:167
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96EL2 Pfam ID:PF14955

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S5, mitochondrial
Gene (Uniprot):MRPS5
Chain IDs:D (auth: AD)
Chain Length:430
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82675 Pfam ID:PF21251, PF00333, PF03719

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S6, mitochondrial
Gene (Uniprot):MRPS6
Chain IDs:E (auth: AE)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82932 Pfam ID:PF01250

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S7, mitochondrial
Gene (Uniprot):MRPS7
Chain IDs:F (auth: AF)
Chain Length:242
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y2R9 Pfam ID:PF00177

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S9, mitochondrial
Gene (Uniprot):MRPS9
Chain IDs:G (auth: AG)
Chain Length:396
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82933 Pfam ID:PF00380

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S10, mitochondrial
Gene (Uniprot):MRPS10
Chain IDs:H (auth: AH)
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82664 Pfam ID:PF00338

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S11, mitochondrial
Gene (Uniprot):MRPS11
Chain IDs:I (auth: AI)
Chain Length:194
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82912 Pfam ID:PF00411

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S12, mitochondrial
Gene (Uniprot):MRPS12
Chain IDs:J (auth: AJ)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O15235 Pfam ID:PF00164

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S14, mitochondrial
Gene (Uniprot):MRPS14
Chain IDs:K (auth: AK)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O60783 Pfam ID:PF00253

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S15, mitochondrial
Gene (Uniprot):MRPS15
Chain IDs:L (auth: AL)
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82914 Pfam ID:PF00312

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S16, mitochondrial
Gene (Uniprot):MRPS16
Chain IDs:M (auth: AM)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y3D3 Pfam ID:PF00886

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S17, mitochondrial
Gene (Uniprot):MRPS17
Chain IDs:N (auth: AN)
Chain Length:130
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y2R5 Pfam ID:PF00366

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S18b, mitochondrial
Gene (Uniprot):MRPS18B
Chain IDs:O (auth: AO)
Chain Length:258
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y676 Pfam ID:PF01084

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S18c, mitochondrial
Gene (Uniprot):MRPS18C
Chain IDs:P (auth: AP)
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y3D5 Pfam ID:PF01084

Protein Blast

Polymer Type:polypeptide(L)
Molecule:MRPS21 isoform 1
Gene (Uniprot):MRPS21
Chain IDs:Q (auth: AQ)
Chain Length:87
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:A0A2J8VEN6 Pfam ID:PF01165

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S22, mitochondrial
Gene (Uniprot):MRPS22
Chain IDs:R (auth: AR)
Chain Length:360
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82650 Pfam ID:PF10245

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S23, mitochondrial
Gene (Uniprot):MRPS23
Chain IDs:S (auth: AS)
Chain Length:190
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y3D9 Pfam ID:PF10484

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S25, mitochondrial
Gene (Uniprot):MRPS25
Chain IDs:T (auth: AT)
Chain Length:173
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P82663 Pfam ID:PF05047

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S26, mitochondrial
Gene (Uniprot):MRPS26
Chain IDs:U (auth: AU)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYN8 Pfam ID:PF14943

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S27, mitochondrial
Gene (Uniprot):MRPS27
Chain IDs:V (auth: AV)
Chain Length:414
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q92552 Pfam ID:PF10037

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S28, mitochondrial
Gene (Uniprot):MRPS28
Chain IDs:W (auth: AW)
Chain Length:22
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y2Q9 Pfam ID:PF10246

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S29, mitochondrial
Gene (Uniprot):DAP3
Chain IDs:X (auth: AX)
Chain Length:398
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P51398 Pfam ID:PF10236

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S31, mitochondrial
Gene (Uniprot):MRPS31
Chain IDs:Y (auth: AY)
Chain Length:52
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q92665 Pfam ID:PF15433

Protein Blast

Polymer Type:polypeptide(L)
Molecule:28S ribosomal protein S33, mitochondrial
Gene (Uniprot):MRPS33
Chain IDs:Z (auth: AZ)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y291 Pfam ID:PF08293

Polymer Type:polyribonucleotide
Molecule:A/A-tRNA
Chain IDs:FA (auth: Aw)
Chain Length:22
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:P/P-tRNA
Chain IDs:GA (auth: Ax)
Chain Length:398
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:E/E-tRNA
Chain IDs:PC (auth: Ay)
Chain Length:52
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:HA (auth: Az)
Chain Length:106
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polyribonucleotide
Molecule:mitochondrial tRNAVal
Chain IDs:JA (auth: B)
Chain Length:72
Number of Molecules:1
Biological Source:Homo sapiens

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L2, mitochondrial
Gene (Uniprot):MRPL2
Chain IDs:KA (auth: D)
Chain Length:306
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q5T653 Pfam ID:PF00181, PF03947

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L3, mitochondrial
Gene (Uniprot):MRPL3
Chain IDs:LA (auth: E)
Chain Length:348
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P09001 Pfam ID:PF00297

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L4, mitochondrial
Gene (Uniprot):MRPL4
Chain IDs:MA (auth: F)
Chain Length:311
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYD3 Pfam ID:PF00573

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L9, mitochondrial
Gene (Uniprot):MRPL9
Chain IDs:NA (auth: H)
Chain Length:158
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYD2 Pfam ID:PF01281, PF22078

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L10, mitochondrial
Gene (Uniprot):MRPL10
Chain IDs:OA (auth: I)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q7Z7H8 Pfam ID:PF00466

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L11, mitochondrial
Gene (Uniprot):MRPL11
Chain IDs:PA (auth: J)
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y3B7 Pfam ID:PF03946, PF00298

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L13, mitochondrial
Gene (Uniprot):MRPL13
Chain IDs:QA (auth: K)
Chain Length:178
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYD1 Pfam ID:PF00572

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L14, mitochondrial
Gene (Uniprot):MRPL14
Chain IDs:RA (auth: L)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6P1L8 Pfam ID:PF00238

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L15, mitochondrial
Gene (Uniprot):MRPL15
Chain IDs:SA (auth: M)
Chain Length:296
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9P015 Pfam ID:PF00828

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L16, mitochondrial
Gene (Uniprot):MRPL16
Chain IDs:TA (auth: N)
Chain Length:251
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NX20 Pfam ID:PF00252

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L17, mitochondrial
Gene (Uniprot):MRPL17
Chain IDs:UA (auth: O)
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NRX2 Pfam ID:PF01196

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L18, mitochondrial
Gene (Uniprot):MRPL18
Chain IDs:VA (auth: P)
Chain Length:180
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H0U6 Pfam ID:PF00861

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L19, mitochondrial
Gene (Uniprot):MRPL19
Chain IDs:WA (auth: Q)
Chain Length:222
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P49406 Pfam ID:PF01245

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L20, mitochondrial
Gene (Uniprot):MRPL20
Chain IDs:XA (auth: R)
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYC9 Pfam ID:PF00453

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L21, mitochondrial
Gene (Uniprot):MRPL21
Chain IDs:YA (auth: S)
Chain Length:439
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q7Z2W9 Pfam ID:PF00829

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L22, mitochondrial
Gene (Uniprot):MRPL22
Chain IDs:ZA (auth: T)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NWU5 Pfam ID:PF00237

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L23, mitochondrial
Gene (Uniprot):MRPL23
Chain IDs:AB (auth: U)
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q16540 Pfam ID:PF00276

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L24, mitochondrial
Gene (Uniprot):MRPL24
Chain IDs:BB (auth: V)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96A35 Pfam ID:PF00467, PF17136

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L27, mitochondrial
Gene (Uniprot):MRPL27
Chain IDs:CB (auth: W)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9P0M9 Pfam ID:PF01016

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L28, mitochondrial
Gene (Uniprot):MRPL28
Chain IDs:DB (auth: X)
Chain Length:256
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q13084 Pfam ID:PF00830

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L47, mitochondrial
Gene (Uniprot):MRPL47
Chain IDs:EB (auth: Y)
Chain Length:198
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9HD33 Pfam ID:PF06984

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L30, mitochondrial
Gene (Uniprot):MRPL30
Chain IDs:FB (auth: Z)
Chain Length:325
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8TCC3 Pfam ID:PF00327

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L42, mitochondrial
Gene (Uniprot):MRPL42
Chain IDs:QB (auth: a)
Chain Length:1558
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9Y6G3 Pfam ID:PF10210

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L43, mitochondrial
Gene (Uniprot):MRPL43
Chain IDs:RB (auth: b)
Chain Length:72
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8N983 Pfam ID:PF05047

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L44, mitochondrial
Gene (Uniprot):MRPL44
Chain IDs:SB (auth: c)
Chain Length:332
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H9J2 Pfam ID:PF22935, PF22892

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L45, mitochondrial
Gene (Uniprot):MRPL45
Chain IDs:TB (auth: d)
Chain Length:306
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BRJ2 Pfam ID:PF04280

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L46, mitochondrial
Gene (Uniprot):MRPL46
Chain IDs:UB (auth: e)
Chain Length:348
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H2W6 Pfam ID:PF11788

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L48, mitochondrial
Gene (Uniprot):MRPL48
Chain IDs:VB (auth: f)
Chain Length:311
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96GC5 Pfam ID:PF00338

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L49, mitochondrial
Gene (Uniprot):MRPL49
Chain IDs:WB (auth: g)
Chain Length:166
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q13405 Pfam ID:PF05046

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L50, mitochondrial
Gene (Uniprot):MRPL50
Chain IDs:XB (auth: h)
Chain Length:158
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8N5N7 Pfam ID:PF10501

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L51, mitochondrial
Gene (Uniprot):MRPL51
Chain IDs:YB (auth: i)
Chain Length:128
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q4U2R6 Pfam ID:PF10244

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L52, mitochondrial
Gene (Uniprot):MRPL52
Chain IDs:ZB (auth: j)
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q86TS9 Pfam ID:PF18699

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L53, mitochondrial
Gene (Uniprot):MRPL53
Chain IDs:AC (auth: k)
Chain Length:178
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96EL3 Pfam ID:PF10780

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L54, mitochondrial
Gene (Uniprot):MRPL54
Chain IDs:BC (auth: l)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6P161 Pfam ID:PF08561

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L55, mitochondrial
Gene (Uniprot):MRPL55
Chain IDs:CC (auth: m)
Chain Length:296
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q7Z7F7 Pfam ID:PF09776

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein 63, mitochondrial
Gene (Uniprot):MRPL57
Chain IDs:DC (auth: o)
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BQC6 Pfam ID:PF14978

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Peptidyl-tRNA hydrolase ICT1, mitochondrial
Gene (Uniprot):MRPL58
Chain IDs:EC (auth: p)
Chain Length:180
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q14197 Pfam ID:PF00472 EC:3.1.1.29

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Growth arrest and DNA damage-inducible proteins-interacting protein 1
Gene (Uniprot):GADD45GIP1
Chain IDs:FC (auth: q)
Chain Length:222
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8TAE8 Pfam ID:PF10147

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein S18a, mitochondrial
Gene (Uniprot):MRPS18A
Chain IDs:GC (auth: r)
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NVS2 Pfam ID:PF01084

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein S30, mitochondrial
Gene (Uniprot):MRPS30
Chain IDs:HC (auth: s)
Chain Length:439
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9NP92 Pfam ID:PF07147

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L12, mitochondrial
Gene (Uniprot):MRPL12
Chain IDs:IC (auth: t), JC (auth: u), KC (auth: v), LC (auth: w), MC (auth: x), NC (auth: y)
Chain Length:198
Number of Molecules:6
Biological Source:Homo sapiens

UniProt ID:P52815 Pfam ID:PF16320, PF00542

Protein Blast

Polymer Type:polypeptide(L)
Molecule:39S ribosomal protein L1, mitochondrial
Gene (Uniprot):MRPL1
Chain IDs:OC (auth: z)
Chain Length:325
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BYD6 Pfam ID:PF00687

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details
1MA	IA	A	modified residue
2MG	JA	G	modified residue
AYA	Q	ALA	modified residue
OMG	IA	G	modified residue
OMU	IA	U	modified residue
PSU	IA	U	modified residue
SAC	QA	SER	modified residue
THC	RB	THR	modified residue

Ligand Molecules

ATP

FES

GDP

NAD

PUT

SPD

SPM

VAL

Primary Citation

Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk.

Singh, V, Itoh, Y, Del'Olio, S, Hassan, A, Naschberger, A, Flygaard, R.K, Nobe, Y, Izumikawa, K, Aibara, S, Andrell, J, Whitford, P.C, Barrientos, A, Taoka, M, Amunts, A, Singh, V, Itoh, Y, Del'Olio, S, Hassan, A, Naschberger, A, Flygaard, R.K, Nobe, Y, Izumikawa, K, Aibara, S, Andrell, J, Whitford, P.C, Barrientos, A, Taoka, M, Amunts, A, Singh, V, Itoh, Y, Del'Olio, S, Hassan, A, Naschberger, A, Flygaard, R.K, Nobe, Y, Izumikawa, K, Aibara, S, Andrell, J, Whitford, P.C, Barrientos, A, Taoka, M, Amunts, A.Show

Nat Commun 15 4272 4272 (2024)

PMID: 38769321 DOI: 10.1038/s41467-024-48163-x

Abstact

The mitoribosome translates mitochondrial mRNAs and regulates energy conversion that is a signature of aerobic life forms. We present a 2.2 Å resolution structure of human mitoribosome together with validated mitoribosomal RNA (rRNA) modifications, including aminoacylated CP-tRNAVal. The structure shows how mitoribosomal proteins stabilise binding of mRNA and tRNA helping to align it in the decoding center, whereas the GDP-bound mS29 stabilizes intersubunit communication. Comparison between different states, with respect to tRNA position, allowed us to characterize a non-canonical L1 stalk, and molecular dynamics simulations revealed how it facilitates tRNA transitions in a way that does not require interactions with rRNA. We also report functionally important polyamines that are depleted when cells are subjected to an antibiotic treatment. The structural, biochemical, and computational data illuminate the principal functional components of the translation mechanism in mitochondria and provide a description of the structure and function of the human mitoribosome.

Legend

Protein

Chemical

Disease

Primary Citation of related structures