ISDA: 7QGG

Deposition Date 2021-12-08

Release Date 2022-10-26

Last Version Date 2024-10-23

Entry Detail

PDB ID:

7QGG

Keywords:

RIBOSOME

Title:

Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state

Biological Source:

Source Organism:

Rattus norvegicus (Taxon ID: 10116)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.86 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):RPL8
Chain IDs:IA (auth: A)
Chain Length:257
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A8B8VPA8 Pfam ID:PF00181, PF03947

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3
Gene (Uniprot):Rpl3
Chain IDs:JA (auth: B)
Chain Length:148
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P21531 Pfam ID:PF00297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4
Gene (Uniprot):Rpl4
Chain IDs:KA (auth: C)
Chain Length:156
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P50878 Pfam ID:PF00573, PF14374

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10a
Gene (Uniprot):Rpl10a
Chain IDs:EC (auth: Cz)
Chain Length:217
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62907 Pfam ID:PF00687

Polymer Type:polyribonucleotide
Molecule:RNA (157-MER)
Chain IDs:LA (auth: D)
Chain Length:157
Number of Molecules:1
Biological Source:Rattus norvegicus

Polymer Type:polyribonucleotide
Molecule:RNA (121-MER)
Chain IDs:MA (auth: E)
Chain Length:121
Number of Molecules:1
Biological Source:Rattus norvegicus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L5
Gene (Uniprot):Rpl5
Chain IDs:NA (auth: F)
Chain Length:135
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P09895 Pfam ID:PF17144, PF14204

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Gene (Uniprot):Rpl6
Chain IDs:OA (auth: G)
Chain Length:298
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P21533 Pfam ID:PF03868, PF01159

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7
Gene (Uniprot):Rpl7
Chain IDs:PA (auth: H)
Chain Length:117
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P05426 Pfam ID:PF08079, PF00327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Gene (Uniprot):Rpl7a
Chain IDs:QA (auth: I)
Chain Length:123
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62425 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L9
Gene (Uniprot):Rpl9
Chain IDs:RA (auth: J)
Chain Length:192
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P17077 Pfam ID:PF00347

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10
Gene (Uniprot):Rpl10
Chain IDs:SA (auth: K)
Chain Length:97
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q6PDV7 Pfam ID:PF00252

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11
Gene (Uniprot):Rpl11
Chain IDs:TA (auth: L)
Chain Length:70
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62914 Pfam ID:PF00281, PF00673

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Gene (Uniprot):Rpl13
Chain IDs:UA (auth: M)
Chain Length:51
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P41123 Pfam ID:PF01294

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14
Gene (Uniprot):Rpl14
Chain IDs:VA (auth: N)
Chain Length:214
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q63507 Pfam ID:PF01929

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):TREES_T100017479, TREES_T100017480
Chain IDs:WA (auth: O)
Chain Length:204
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:L8Y0W1 Pfam ID:PF00827

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13a
Gene (Uniprot):Rpl13a
Chain IDs:XA (auth: P)
Chain Length:106
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q5RK10 Pfam ID:PF00572

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L17
Gene (Uniprot):Rpl17
Chain IDs:YA (auth: Q)
Chain Length:184
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A8J4KQ25 Pfam ID:PF00237

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18
Gene (Uniprot):Rpl18
Chain IDs:ZA (auth: R)
Chain Length:188
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P12001 Pfam ID:PF17135

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):CK820_G0039174
Chain IDs:AB (auth: S)
Chain Length:196
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2J8KH59 Pfam ID:PF01280

Polymer Type:polyribonucleotide
Molecule:RNA (1872-MER)
Chain IDs:A (auth: S2)
Chain Length:1872
Number of Molecules:1
Biological Source:Rattus norvegicus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein SA
Gene (Uniprot):Rpsa
Chain IDs:B (auth: SA)
Chain Length:295
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P38983 Pfam ID:PF00318, PF16122

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3a
Gene (Uniprot):Rps3a
Chain IDs:C (auth: SB)
Chain Length:84
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P49242 Pfam ID:PF01015

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S2
Gene (Uniprot):Rps2
Chain IDs:W (auth: SC)
Chain Length:293
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P27952 Pfam ID:PF00333, PF03719

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3
Gene (Uniprot):Rps3
Chain IDs:D (auth: SD)
Chain Length:56
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62909 Pfam ID:PF07650, PF00189

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4, X isoform
Gene (Uniprot):Rps4x
Chain IDs:E (auth: SE)
Chain Length:59
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62703 Pfam ID:PF08071, PF00900, PF00467, PF16121

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S5
Gene (Uniprot):Rps5
Chain IDs:F (auth: SF)
Chain Length:204
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:B0BN81 Pfam ID:PF00177

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):Rps6
Chain IDs:X (auth: SG)
Chain Length:317
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62755 Pfam ID:PF01092

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):Rps7
Chain IDs:G (auth: SH)
Chain Length:194
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62083 Pfam ID:PF01251

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):Rps8
Chain IDs:H (auth: SI)
Chain Length:208
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62243 Pfam ID:PF01201

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S9
Gene (Uniprot):RPS9
Chain IDs:Y (auth: SJ)
Chain Length:194
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A6J0B498 Pfam ID:PF00163, PF01479

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S10
Gene (Uniprot):Rps10
Chain IDs:I (auth: SK)
Chain Length:165
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P63326 Pfam ID:PF03501

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S11
Gene (Uniprot):RPS11
Chain IDs:J (auth: SL)
Chain Length:158
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A8B8VW69 Pfam ID:PF16205, PF00366

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S12
Gene (Uniprot):Rps12
Chain IDs:Z (auth: SM)
Chain Length:132
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P63324 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Gene (Uniprot):RPS13
Chain IDs:AA (auth: SN)
Chain Length:151
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A663F1C0 Pfam ID:PF08069, PF00312

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S14
Gene (Uniprot):Rps14
Chain IDs:BA (auth: SO)
Chain Length:151
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P13471 Pfam ID:PF00411

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15
Chain IDs:K (auth: SP)
Chain Length:145
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2K6QL61 Pfam ID:PF00203

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Rps16 protein
Gene (Uniprot):LOC102548369
Chain IDs:L (auth: SQ)
Chain Length:146
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q5XFV9 Pfam ID:PF00380

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17
Gene (Uniprot):Rps17
Chain IDs:M (auth: SR)
Chain Length:135
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P04644 Pfam ID:PF00833

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18
Gene (Uniprot):RPS18
Chain IDs:N (auth: SS)
Chain Length:152
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:H0WTR0 Pfam ID:PF00416

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19
Gene (Uniprot):Rps19
Chain IDs:O (auth: ST)
Chain Length:145
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P17074 Pfam ID:PF01090

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S20
Gene (Uniprot):Rps20
Chain IDs:P (auth: SU)
Chain Length:119
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P60868 Pfam ID:PF00338

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21
Gene (Uniprot):Rps21
Chain IDs:Q (auth: SV)
Chain Length:83
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P05765 Pfam ID:PF01249

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15a
Chain IDs:CA (auth: SW)
Chain Length:130
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2K5QKS6 Pfam ID:PF00410

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S23
Gene (Uniprot):RPS23
Chain IDs:R (auth: SX)
Chain Length:143
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A340WVW7 Pfam ID:PF00164

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):Rps24
Chain IDs:DA (auth: SY)
Chain Length:133
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62850 Pfam ID:PF01282

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):RPS25
Chain IDs:EA (auth: SZ)
Chain Length:125
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A6J3IG71 Pfam ID:PF03297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Chain IDs:S (auth: Sa)
Chain Length:295
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2K5LQY6 Pfam ID:PF01283

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):HJG63_016964
Chain IDs:FA (auth: Sb)
Chain Length:84
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A7J8BG50 Pfam ID:PF01667

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28
Gene (Uniprot):DUI87_22462
Chain IDs:T (auth: Sc)
Chain Length:293
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A3M0JHZ8 Pfam ID:PF01200

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29
Gene (Uniprot):CR201_G0009512
Chain IDs:U (auth: Sd)
Chain Length:56
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2J8WKD7 Pfam ID:PF00253

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin-like domain-containing protein
Chain IDs:GA (auth: Se)
Chain Length:59
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2K6U587 Pfam ID:PF04758

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin-40S ribosomal protein S27a
Gene (Uniprot):Rps27a
Chain IDs:HA (auth: Sf)
Chain Length:204
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62982 Pfam ID:PF00240, PF01599

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Receptor of activated protein C kinase 1
Gene (Uniprot):RACK1
Chain IDs:V (auth: Sg)
Chain Length:317
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2K6K8B0 Pfam ID:PF00400

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18a
Gene (Uniprot):Rpl18a
Chain IDs:BB (auth: T)
Chain Length:176
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62718 Pfam ID:PF01775

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21
Gene (Uniprot):Rpl21
Chain IDs:CB (auth: U)
Chain Length:76
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q6PDW2 Pfam ID:PF01157

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22
Gene (Uniprot):Rpl22
Chain IDs:DB (auth: V)
Chain Length:128
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q6PDV8 Pfam ID:PF01776

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23
Chain IDs:EB (auth: W)
Chain Length:140
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A3P9HH38 Pfam ID:PF00238

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L24
Gene (Uniprot):Rpl24
Chain IDs:FB (auth: X)
Chain Length:157
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:F2X267 Pfam ID:PF01246

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23a
Gene (Uniprot):Rpl23a
Chain IDs:GB (auth: Y)
Chain Length:4
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62752 Pfam ID:PF03939, PF00276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L26
Gene (Uniprot):Rpl26
Chain IDs:HB (auth: Z)
Chain Length:145
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P12749 Pfam ID:PF16906, PF00467

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):Rpl27
Chain IDs:IB (auth: a)
Chain Length:257
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A851LWS6 Pfam ID:PF00467, PF01777

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27a
Gene (Uniprot):Rpl27a
Chain IDs:JB (auth: b)
Chain Length:148
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P18445 Pfam ID:PF00828

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):Rpl29
Chain IDs:KB (auth: c)
Chain Length:156
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P25886 Pfam ID:PF01779

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L30
Gene (Uniprot):Rpl30
Chain IDs:LB (auth: d)
Chain Length:157
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62890 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31
Chain IDs:MB (auth: e)
Chain Length:121
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:G7NZE1 Pfam ID:PF01198

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Gene (Uniprot):Rpl32
Chain IDs:NB (auth: f)
Chain Length:135
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62912 Pfam ID:PF01655

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35a
Gene (Uniprot):Rpl35a
Chain IDs:OB (auth: g)
Chain Length:298
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P04646 Pfam ID:PF01247

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34
Chain IDs:PB (auth: h)
Chain Length:117
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A6HVR9 Pfam ID:PF01199

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35
Gene (Uniprot):Rpl35
Chain IDs:QB (auth: i)
Chain Length:123
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P17078 Pfam ID:PF00831

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):RPL36
Chain IDs:RB (auth: j)
Chain Length:192
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q9Y3U8 Pfam ID:PF01158

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):LOC101347038
Chain IDs:SB (auth: k)
Chain Length:97
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A2Y9RW09 Pfam ID:PF01907

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38
Gene (Uniprot):RPL38
Chain IDs:TB (auth: l)
Chain Length:70
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A1A7W9T9 Pfam ID:PF01781

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L39
Gene (Uniprot):LOC100920732
Chain IDs:UB (auth: m)
Chain Length:51
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A7N4PFJ2 Pfam ID:PF00832

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin-60S ribosomal protein L40
Gene (Uniprot):Uba52
Chain IDs:VB (auth: n)
Chain Length:214
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:Q6P7R7 Pfam ID:PF00240, PF01020

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41
Gene (Uniprot):Rpl41
Chain IDs:WB (auth: o)
Chain Length:204
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P62948 Pfam ID:PF05162

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L36a
Gene (Uniprot):mPipKuh1_015125
Chain IDs:XB (auth: p)
Chain Length:106
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A7J7V6K8 Pfam ID:PF00935

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37a
Gene (Uniprot):RPL37A
Chain IDs:YB (auth: q)
Chain Length:184
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:A0A6J2LF66 Pfam ID:PF01780

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28
Gene (Uniprot):Rpl28
Chain IDs:ZB (auth: r)
Chain Length:188
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:F7EPV5 Pfam ID:PF01778

Polymer Type:polyribonucleotide
Molecule:RNA (4803-MER)
Chain IDs:AC (auth: t)
Chain Length:176
Number of Molecules:1
Biological Source:Rattus norvegicus

Polymer Type:polyribonucleotide
Molecule:RNA (76-MER)
Chain IDs:BC (auth: u)
Chain Length:76
Number of Molecules:1
Biological Source:Rattus norvegicus

Polymer Type:polyribonucleotide
Molecule:RNA (76-MER)
Chain IDs:CC (auth: v)
Chain Length:128
Number of Molecules:1
Biological Source:Rattus norvegicus

Polymer Type:polyribonucleotide
Molecule:RNA (5'-D(P*()P*()P*()P*())-R(P*UP*UP*AP*CP*GP*GP*CP*GP*GP*UP*()P*()P*()P*()P*()P*())-3')
Chain IDs:DC (auth: w)
Chain Length:140
Number of Molecules:1
Biological Source:Rattus norvegicus

Polymer Type:polypeptide(L)
Molecule:ALA-ALA-LYS-ALA
Chain IDs:FC (auth: y)
Chain Length:4
Number of Molecules:1
Biological Source:Rattus norvegicus

Ligand Molecules

Primary Citation

Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state.

Kipper, K, Mansour, A, Pulk, A.Show

J.Mol.Biol. 434 167801 167801 (2022)

PMID: 36038000 DOI: 10.1016/j.jmb.2022.167801

Abstact

The polarized cell morphology of neurons dictates many neuronal processes, including the axodendridic transport of specific mRNAs and subsequent translation. mRNAs together with ribosomes and RNA-binding proteins form RNA granules that are targeted to axodendrites for localized translation in neurons. It has been established that localized protein synthesis in neurons is essential for long-term memory formation, synaptic plasticity, and neurodegeneration. We have used proteomics and electron microscopy to characterize neuronal RNA granules (nRNAg) isolated from rat brain tissues or human neuroblastoma. We show that ribosome-containing RNA granules are morula-like structures when visualized by electron microscopy. Crosslinking-coupled mass-spectrometry identified a potential G3BP2 binding site on the ribosome near the eIF3d-binding site on the 40S ribosomal subunit. We used cryo-EM to resolve the structure of the ribosome-component of nRNAg. The cryo-EM reveals that predominant particles in nRNAg are 80S ribosomes, resembling the pre-translocation state where tRNA's are in the hybrid A/P and P/E site. We also describe a new kind of principal motion of the ribosome, which we call the rocking motion.

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Primary Citation of related structures

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