7QEP image
Deposition Date 2021-12-03
Release Date 2022-02-09
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7QEP
Keywords:
Title:
Cryo-EM structure of the ribosome from Encephalitozoon cuniculi
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:5.8S-23S ribosomal RNA
Chain IDs:B (auth: 1)
Chain Length:2486
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:C (auth: 2)
Chain Length:119
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polyribonucleotide
Molecule:18S ribosomal RNA
Chain IDs:D (auth: 3)
Chain Length:1300
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S10
Gene (Uniprot):ECU04_1355
Chain IDs:E (auth: C0)
Chain Length:96
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S11
Gene (Uniprot):ECU04_0640
Chain IDs:F (auth: C1)
Chain Length:156
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S12
Gene (Uniprot):ECU01_0920
Chain IDs:G (auth: C2)
Chain Length:134
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Gene (Uniprot):RPS13
Chain IDs:H (auth: C3)
Chain Length:148
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S14
Gene (Uniprot):RPS14
Chain IDs:I (auth: C4)
Chain Length:134
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:RIBOSOMAL PROTEIN S15
Gene (Uniprot):ECU08_0350i
Chain IDs:J (auth: C5)
Chain Length:148
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S16
Gene (Uniprot):ECU03_0310
Chain IDs:K (auth: C6)
Chain Length:145
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17
Gene (Uniprot):RPS17
Chain IDs:L (auth: C7)
Chain Length:120
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18
Gene (Uniprot):RPS18
Chain IDs:M (auth: C8)
Chain Length:153
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19
Gene (Uniprot):RPS19
Chain IDs:N (auth: C9)
Chain Length:137
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S20
Gene (Uniprot):ECU11_0720
Chain IDs:O (auth: D0)
Chain Length:120
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:ECU11_0225 protein
Gene (Uniprot):ECU11_0225
Chain IDs:P (auth: D1)
Chain Length:70
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S15A (S22 in yeast)
Gene (Uniprot):ECU09_1350
Chain IDs:Q (auth: D2)
Chain Length:128
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S23
Gene (Uniprot):RPS23
Chain IDs:R (auth: D3)
Chain Length:140
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S24
Gene (Uniprot):ECU10_1570i
Chain IDs:S (auth: D4)
Chain Length:131
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):RPS25-1, RPS25-2
Chain IDs:T (auth: D5)
Chain Length:109
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):RPS26
Chain IDs:U (auth: D6)
Chain Length:105
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S27
Gene (Uniprot):ECU04_1015
Chain IDs:V (auth: D7)
Chain Length:85
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S28
Gene (Uniprot):ECU09_1275
Chain IDs:W (auth: D8)
Chain Length:65
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29
Chain IDs:X (auth: D9)
Chain Length:66
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:Similarity to monoubiquitin/carboxy-extension protein fusion
Gene (Uniprot):ECU02_1080
Chain IDs:Y (auth: E1)
Chain Length:152
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L1
Gene (Uniprot):RPL1
Chain IDs:Z (auth: L1)
Chain Length:219
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):RPL8
Chain IDs:AA (auth: L2)
Chain Length:239
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3
Gene (Uniprot):RPL3-1, RPL3-2
Chain IDs:BA (auth: L3)
Chain Length:383
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L4
Gene (Uniprot):ECU08_0830
Chain IDs:CA (auth: L4)
Chain Length:335
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L5
Gene (Uniprot):ECU06_0900i
Chain IDs:DA (auth: L5)
Chain Length:287
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L6
Gene (Uniprot):ECU08_1780
Chain IDs:EA (auth: L6)
Chain Length:171
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7
Gene (Uniprot):RPL7
Chain IDs:FA (auth: L7)
Chain Length:239
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Gene (Uniprot):RPL7A
Chain IDs:GA (auth: L8)
Chain Length:206
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L9
Gene (Uniprot):ECU02_0800
Chain IDs:HA (auth: L9)
Chain Length:183
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10
Gene (Uniprot):RPL10
Chain IDs:IA (auth: M0)
Chain Length:219
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11
Gene (Uniprot):RPL11
Chain IDs:JA (auth: M1)
Chain Length:173
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L13
Gene (Uniprot):ECU03_0320
Chain IDs:KA (auth: M3)
Chain Length:163
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:ECU06_1215 protein
Gene (Uniprot):ECU06_1215
Chain IDs:LA (auth: M4)
Chain Length:106
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):ECU11_1380i
Chain IDs:MA (auth: M5)
Chain Length:204
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L13A (L16)
Gene (Uniprot):ECU04_1380
Chain IDs:NA (auth: M6)
Chain Length:198
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L17
Gene (Uniprot):ECU07_1410
Chain IDs:OA (auth: M7)
Chain Length:183
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L18
Gene (Uniprot):ECU03_1490
Chain IDs:PA (auth: M8)
Chain Length:200
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L19
Gene (Uniprot):ECU06_1080i
Chain IDs:QA (auth: M9)
Chain Length:171
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein ECU01_0250
Gene (Uniprot):ECU01_0250
Chain IDs:RA (auth: MD)
Chain Length:171
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:ECU06_1135 protein
Gene (Uniprot):ECU06_1135
Chain IDs:SA (auth: MS)
Chain Length:73
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L20
Gene (Uniprot):ECU08_0600i
Chain IDs:TA (auth: N0)
Chain Length:188
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21
Gene (Uniprot):RPL21
Chain IDs:UA (auth: N1)
Chain Length:160
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22
Gene (Uniprot):RPL22
Chain IDs:VA (auth: N2)
Chain Length:112
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23
Gene (Uniprot):RPL23
Chain IDs:WA (auth: N3)
Chain Length:146
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:Similarity to 60S RIBOSOMAL PROTEIN L24
Gene (Uniprot):ECU07_0930
Chain IDs:XA (auth: N4)
Chain Length:100
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L23A
Gene (Uniprot):ECU08_1910, ECU10_0160
Chain IDs:YA (auth: N5)
Chain Length:105
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L26
Gene (Uniprot):ECU08_0370
Chain IDs:ZA (auth: N6)
Chain Length:143
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L27
Gene (Uniprot):ECU04_0330
Chain IDs:AB (auth: N7)
Chain Length:126
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27a
Gene (Uniprot):RPL27A
Chain IDs:BB (auth: N8)
Chain Length:147
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):ECU04_1005
Chain IDs:CB (auth: N9)
Chain Length:57
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L30
Gene (Uniprot):ECU05_1490
Chain IDs:DB (auth: O0)
Chain Length:108
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31
Gene (Uniprot):RPL31
Chain IDs:EB (auth: O1)
Chain Length:111
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Gene (Uniprot):RPL32
Chain IDs:FB (auth: O2)
Chain Length:139
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L35A (L33)
Gene (Uniprot):ECU02_0900
Chain IDs:GB (auth: O3)
Chain Length:113
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34
Gene (Uniprot):RPL34
Chain IDs:HB (auth: O4)
Chain Length:110
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35-1
Gene (Uniprot):RPL35A, RPL35B
Chain IDs:IB (auth: O5)
Chain Length:122
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):RPL36
Chain IDs:JB (auth: O6)
Chain Length:94
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37
Gene (Uniprot):RPL37
Chain IDs:KB (auth: O7)
Chain Length:90
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L39
Gene (Uniprot):RPL39
Chain IDs:LB (auth: O9)
Chain Length:52
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:UBIQUITIN/ L40 RIBOSOMAL PROTEIN FUSION
Gene (Uniprot):ECU07_1380
Chain IDs:MB (auth: P0)
Chain Length:131
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L44
Gene (Uniprot):RPL44
Chain IDs:NB (auth: P2)
Chain Length:104
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:60S RIBOSOMAL PROTEIN L37A (L43)
Gene (Uniprot):ECU07_1005
Chain IDs:OB (auth: P3)
Chain Length:89
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide binding protein beta subunit
Gene (Uniprot):ECU08_1110
Chain IDs:A (auth: RA)
Chain Length:334
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S0
Gene (Uniprot):RPS0
Chain IDs:PB (auth: S0)
Chain Length:252
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S1
Gene (Uniprot):RPS1
Chain IDs:QB (auth: S1)
Chain Length:239
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S RIBOSOMAL PROTEIN S2
Gene (Uniprot):ECU07_1700
Chain IDs:RB (auth: S2)
Chain Length:242
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3
Gene (Uniprot):RPS3
Chain IDs:SB (auth: S3)
Chain Length:216
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):RPS4
Chain IDs:TB (auth: S4)
Chain Length:268
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S5
Gene (Uniprot):RPS5
Chain IDs:UB (auth: S5)
Chain Length:189
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:VB (auth: S6)
Chain Length:217
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):RPS7
Chain IDs:WB (auth: S7)
Chain Length:170
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):ECU02_0880
Chain IDs:XB (auth: S8)
Chain Length:173
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S9
Gene (Uniprot):RPS9
Chain IDs:YB (auth: S9)
Chain Length:184
Number of Molecules:1
Biological Source:Encephalitozoon cuniculi GB-M1
Primary Citation
Adaptation to genome decay in the structure of the smallest eukaryotic ribosome
Nat Commun 13 591 ? (2022)
DOI: 10.1038/s41467-022-28281-0
Primary Citation of related structures