7QCW image
Deposition Date 2021-11-25
Release Date 2022-10-12
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7QCW
Title:
Apo-structure of serine hydroxymethyltransferase (PbzB) involved in benzobactin biosynthesis in P. chlororaphis subsp. piscium DSM 21509
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.81 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine hydroxymethyltransferase
Chain IDs:A, B
Chain Length:460
Number of Molecules:2
Biological Source:Pseudomonas chlororaphis subsp. piscium
Ligand Molecules
Primary Citation
Genome Mining Enabled by Biosynthetic Characterization Uncovers a Class of Benzoxazolinate-Containing Natural Products in Diverse Bacteria.
Angew.Chem.Int.Ed.Engl. 61 e202206106 e202206106 (2022)
PMID: 36198080 DOI: 10.1002/anie.202206106

Abstact

Benzoxazolinate is a rare bis-heterocyclic moiety that interacts with proteins and DNA and confers extraordinary bioactivities on natural products, such as C-1027. However, the biosynthetic gene responsible for the key cyclization step of benzoxazolinate remains unclear. Herein, we show a putative acyl AMP-ligase responsible for the last cyclization step. We used the enzyme as a probe for genome mining and discovered that the orphan benzobactin gene cluster in entomopathogenic bacteria prevails across Proteobacteria and Firmicutes. It turns out that Pseudomonas chlororaphis produces various benzobactins, whose biosynthesis is highlighted by a synergistic effect of two unclustered genes encoding enzymes on boosting benzobactin production; the formation of non-proteinogenic 2-hydroxymethylserine by a serine hydroxymethyltransferase; and the types I and II NRPS architecture for structural diversity. Our findings reveal the biosynthetic potential of a widespread benzobactin gene cluster.

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Primary Citation of related structures