ISDA

7QCA image

Entry Detail

PDB ID:

7QCA

EMDB ID:

Keywords:

Title:

Spraguea lophii ribosome

Biological Source:

Source Organism:

Spraguea lophii 42_110

Host Organism:

Spraguea lophii

PDB Version:

Deposition Date:

2021-11-22

Release Date:

2022-11-30

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.79 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

7QCA validation report

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Description:RNA 23S
Chain IDs:A (auth: L50)
Chain Length:2618
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Polymer Type:polyribonucleotide
Description:RNA 5S
Chain IDs:B (auth: L70)
Chain Length:119
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8
Chain IDs:C (auth: LA0)
Chain Length:246
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Polymer Type:polypeptide(L)
Description:uL15 LAA
Chain IDs:D (auth: LAA)
Chain Length:147
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L3
Chain IDs:E (auth: LB0)
Chain Length:392
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XFB1 Pfam ID:PF00297

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4
Chain IDs:F (auth: LC0)
Chain Length:328
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WCM8 Pfam ID:PF00573

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L3
Chain IDs:G (auth: LCC)
Chain Length:110
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WAY0 Pfam ID:PF01248

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L5
Chain IDs:H (auth: LD0)
Chain Length:291
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XIG7 Pfam ID:PF17144, PF14204

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L31
Chain IDs:I (auth: LDD)
Chain Length:110
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XW48 Pfam ID:PF01198

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:J (auth: LE0)
Chain Length:171
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W5S3

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32
Chain IDs:K (auth: LEE)
Chain Length:139
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XKE0 Pfam ID:PF01655

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L7
Chain IDs:L (auth: LF0)
Chain Length:235
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W946 Pfam ID:PF00327

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L35a
Chain IDs:M (auth: LFF)
Chain Length:111
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W662 Pfam ID:PF01247

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8
Chain IDs:N (auth: LG0)
Chain Length:206
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XU63 Pfam ID:PF01248

Protein Blast

Polymer Type:polypeptide(L)
Description:Ribosomal protein L34
Chain IDs:O (auth: LGG)
Chain Length:106
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W7C6 Pfam ID:PF01199

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L9
Chain IDs:P (auth: LH0)
Chain Length:187
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XRZ9 Pfam ID:PF00347

Polymer Type:polypeptide(L)
Description:Ribosomal L29 protein
Chain IDs:Q (auth: LHH)
Chain Length:119
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:S60 ribosomal protein L10
Chain IDs:R (auth: LI0)
Chain Length:218
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WBF8 Pfam ID:PF00252

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:S (auth: LII)
Chain Length:98
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WED1 Pfam ID:PF01158

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L11
Chain IDs:T (auth: LJ0)
Chain Length:171
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WB69 Pfam ID:PF00281, PF00673

Polymer Type:polypeptide(L)
Description:eL37 LJJ
Chain IDs:U (auth: LJJ)
Chain Length:92
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13
Chain IDs:V (auth: LL0)
Chain Length:165
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XVM9 Pfam ID:PF01294

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L39
Chain IDs:W (auth: LLL)
Chain Length:52
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XTP1 Pfam ID:PF00832

Protein Blast

Polymer Type:polypeptide(L)
Description:eL14 LM0
Chain IDs:X (auth: LM0)
Chain Length:122
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XVN9

Protein Blast

Polymer Type:polypeptide(L)
Description:Ubiquitin
Chain IDs:Y (auth: LMM)
Chain Length:127
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XSQ3 Pfam ID:PF00240, PF01020

Protein Blast

Polymer Type:polypeptide(L)
Description:Ribosomal protein L15
Chain IDs:Z (auth: LN0)
Chain Length:204
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W7A2 Pfam ID:PF00827

Protein Blast

Polymer Type:polypeptide(L)
Description:Ribosomal protein L13A
Chain IDs:AA (auth: LO0)
Chain Length:198
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XUD8 Pfam ID:PF00572

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L44
Chain IDs:BA (auth: LOO)
Chain Length:104
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XL20 Pfam ID:PF00935

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L17
Chain IDs:CA (auth: LP0)
Chain Length:167
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WDR4 Pfam ID:PF00237

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L37a
Chain IDs:DA (auth: LPP)
Chain Length:89
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L18
Chain IDs:EA (auth: LQ0)
Chain Length:183
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WAI2 Pfam ID:PF17135

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L19
Chain IDs:FA (auth: LR0)
Chain Length:168
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WBY9 Pfam ID:PF01280

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L20
Chain IDs:GA (auth: LS0)
Chain Length:171
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WAG4 Pfam ID:PF01775

Protein Blast

Polymer Type:polypeptide(L)
Description:60s ribosomal protein L21
Chain IDs:HA (auth: LT0)
Chain Length:158
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W8F6 Pfam ID:PF01157

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L22
Chain IDs:IA (auth: LU0)
Chain Length:113
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W958 Pfam ID:PF01776

Protein Blast

Polymer Type:polypeptide(L)
Description:Ribosomal protein L23
Chain IDs:JA (auth: LV0)
Chain Length:142
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XLC4 Pfam ID:PF00238

Protein Blast

Polymer Type:polypeptide(L)
Description:Ribosomal protein L24E
Chain IDs:KA (auth: LW0)
Chain Length:131
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XSY2 Pfam ID:PF01246

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L23a
Chain IDs:LA (auth: LX0)
Chain Length:113
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XFW8 Pfam ID:PF00276

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L26
Chain IDs:MA (auth: LY0)
Chain Length:131
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W884 Pfam ID:PF16906, PF00467

Protein Blast

Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:NA (auth: LZ0)
Chain Length:153
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XU08 Pfam ID:PF01777

Polymer Type:polyribonucleotide
Description:RNA SSU
Chain IDs:OA (auth: S60)
Chain Length:1368
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S0
Chain IDs:PA (auth: SA0)
Chain Length:233
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W8R1 Pfam ID:PF00318

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26
Chain IDs:QA (auth: SAA)
Chain Length:102
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W9M7 Pfam ID:PF01283

Polymer Type:polypeptide(L)
Description:eS1 SB0
Chain IDs:RA (auth: SB0)
Chain Length:230
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Polymer Type:polypeptide(L)
Description:eS27 SBB
Chain IDs:SA (auth: SBB)
Chain Length:82
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S2
Chain IDs:TA (auth: SC0)
Chain Length:248
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W7R5 Pfam ID:PF00333, PF03719

Polymer Type:polypeptide(L)
Description:eS28 SCC
Chain IDs:UA (auth: SCC)
Chain Length:65
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3
Chain IDs:VA (auth: SD0)
Chain Length:242
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WAW0 Pfam ID:PF00189

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S29
Chain IDs:WA (auth: SDD)
Chain Length:65
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XJB1 Pfam ID:PF00253

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4
Chain IDs:XA (auth: SE0)
Chain Length:280
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XG51 Pfam ID:PF08071, PF00900, PF16121

Polymer Type:polypeptide(L)
Description:eS30 SEE
Chain IDs:YA (auth: SEE)
Chain Length:60
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S5
Chain IDs:ZA (auth: SF0)
Chain Length:195
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W4M9 Pfam ID:PF00177

Protein Blast

Polymer Type:polypeptide(L)
Description:Ubiquitin/40s ribosomal protein S27a fusion
Chain IDs:AB (auth: SFF)
Chain Length:150
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W9X5 Pfam ID:PF00240, PF01599

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:BB (auth: SG0)
Chain Length:230
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:Guanine nucleotide binding protein beta subunit
Chain IDs:CB (auth: SGG)
Chain Length:326
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XVG3 Pfam ID:PF00400

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S7
Chain IDs:DB (auth: SH0)
Chain Length:164
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XV29 Pfam ID:PF01251

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:EB (auth: SI0)
Chain Length:173
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XGW2 Pfam ID:PF01201

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S9
Chain IDs:FB (auth: SJ0)
Chain Length:184
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W8E3 Pfam ID:PF01479

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S10
Chain IDs:GB (auth: SK0)
Chain Length:107
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XU48 Pfam ID:PF03501

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11
Chain IDs:HB (auth: SL0)
Chain Length:155
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W8R0 Pfam ID:PF16205, PF00366

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S12
Chain IDs:IB (auth: SM0)
Chain Length:130
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W7D2 Pfam ID:PF01248

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S13
Chain IDs:JB (auth: SN0)
Chain Length:143
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XVZ9 Pfam ID:PF08069

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S14
Chain IDs:KB (auth: SO0)
Chain Length:135
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W6I0 Pfam ID:PF00411

Protein Blast

Polymer Type:polypeptide(L)
Description:Ribosomal protein S19
Chain IDs:LB (auth: SP0)
Chain Length:163
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XKY9 Pfam ID:PF00203

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S16
Chain IDs:MB (auth: SQ0)
Chain Length:143
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WDU9 Pfam ID:PF00380

Polymer Type:polypeptide(L)
Description:eS17 SR0
Chain IDs:NB (auth: SR0)
Chain Length:120
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S18
Chain IDs:OB (auth: SS0)
Chain Length:160
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XJA1 Pfam ID:PF00416

Protein Blast

Polymer Type:polypeptide(L)
Description:40S Ribosomal protein S19
Chain IDs:PB (auth: ST0)
Chain Length:143
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W7P5 Pfam ID:PF01090

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S20
Chain IDs:QB (auth: SU0)
Chain Length:119
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W986 Pfam ID:PF00338

Protein Blast

Polymer Type:polypeptide(L)
Description:Ribosomal protein S21E
Chain IDs:RB (auth: SV0)
Chain Length:67
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WAC1 Pfam ID:PF01249

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S15A
Chain IDs:SB (auth: SW0)
Chain Length:128
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7XK92 Pfam ID:PF00410

Polymer Type:polypeptide(L)
Description:uS12 SX0
Chain IDs:TB (auth: SX0)
Chain Length:141
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

Protein Blast

Polymer Type:polypeptide(L)
Description:40s ribosomal protein s24
Chain IDs:UB (auth: SY0)
Chain Length:146
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7W8J5 Pfam ID:PF01282

Protein Blast

Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25
Chain IDs:VB (auth: SZ0)
Chain Length:128
Number of Molecules:1
Biological Source:Spraguea lophii 42_110

UniProt ID:S7WAV8 Pfam ID:PF03297

Ligand Molecules

K

MG

ZN

Primary Citation

CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state

McLaren, M, Conners, R, Isupov, M.N, Gil-Diez, P, Gambelli, L, Gold, V.A.M, Walter, A, Connell, S.R, Williams, B, Daum, B.Show

Nat Microbiol ? ? ? (2023)

DOI: 10.1038/s41564-023-01469-w

Primary Citation of related structures

7QCA