7QBP image
Deposition Date 2021-11-19
Release Date 2022-04-06
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7QBP
Keywords:
Title:
Crystal structure of R2-like ligand-binding oxidase from Saccharopolyspora Erythraea
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.38 Å
R-Value Free:
0.16
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:R2-like ligand binding oxidase
Gene (Uniprot):SACE_0591
Chain IDs:A
Chain Length:330
Number of Molecules:1
Biological Source:Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)
Primary Citation
Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.
Febs Lett. 596 1600 1610 (2022)
PMID: 35175627 DOI: 10.1002/1873-3468.14319

Abstact

R2-like ligand-binding oxidase (R2lox) is a ferritin-like protein that harbours a heterodinuclear manganese-iron active site. Although R2lox function is yet to be established, the enzyme binds a fatty acid ligand coordinating the metal centre and catalyses the formation of a tyrosine-valine ether cross-link in the protein scaffold upon O2 activation. Here, we characterized the ligands copurified with R2lox by mass spectrometry-based metabolomics. Moreover, we present the crystal structures of two new homologs of R2lox, from Saccharopolyspora erythraea and Sulfolobus acidocaldarius, at 1.38 Å and 2.26 Å resolution, respectively, providing the highest resolution structure for R2lox, as well as new insights into putative mechanisms regulating the function of the enzyme.

Legend

Protein

Chemical

Disease

Primary Citation of related structures