7QBK image
Deposition Date 2021-11-19
Release Date 2022-04-06
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7QBK
Keywords:
Title:
Crystal structure of a second homolog of R2-like ligand-binding oxidase in Sulfolobus acidocaldarius (SaR2loxII)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.26 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 64
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:R2-like ligand-binding oxidase (homolog II) from Sulfolobus acidocaldarius
Gene (Uniprot):Saci_1112
Chain IDs:A
Chain Length:322
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639
Primary Citation
Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.
Febs Lett. 596 1600 1610 (2022)
PMID: 35175627 DOI: 10.1002/1873-3468.14319

Abstact

R2-like ligand-binding oxidase (R2lox) is a ferritin-like protein that harbours a heterodinuclear manganese-iron active site. Although R2lox function is yet to be established, the enzyme binds a fatty acid ligand coordinating the metal centre and catalyses the formation of a tyrosine-valine ether cross-link in the protein scaffold upon O2 activation. Here, we characterized the ligands copurified with R2lox by mass spectrometry-based metabolomics. Moreover, we present the crystal structures of two new homologs of R2lox, from Saccharopolyspora erythraea and Sulfolobus acidocaldarius, at 1.38 Å and 2.26 Å resolution, respectively, providing the highest resolution structure for R2lox, as well as new insights into putative mechanisms regulating the function of the enzyme.

Legend

Protein

Chemical

Disease

Primary Citation of related structures