7Q5U image
Entry Detail
PDB ID:
7Q5U
Keywords:
Title:
The tandem SH2 domains of SYK with a bound CD3G diphospho-ITAM peptide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-11-04
Release Date:
2021-11-24
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tyrosine-protein kinase SYK
Chain IDs:A (auth: AAA), B (auth: BBB), C (auth: CCC), D (auth: DDD), E (auth: EEE), F (auth: FFF)
Chain Length:265
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T-cell surface glycoprotein CD3 gamma chain
Chain IDs:G (auth: GGG), H (auth: HHH), I (auth: III), J (auth: JJJ), K (auth: KKK), L (auth: LLL)
Chain Length:20
Number of Molecules:6
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PTR G TYR modified residue
Primary Citation
The mechanism of allosteric activation of SYK kinase derived from multiple phospho-ITAM-bound structures.
Structure 32 2337 2351.e4 (2024)
PMID: 39442513 DOI: 10.1016/j.str.2024.09.024

Abstact

Spleen tyrosine kinase (SYK) is central to adaptive and innate immune signaling. It features a regulatory region containing tandem SH2 (tSH2) domains separated by a helical "hinge" segment keeping SYK inactive by associating with the kinase domain. SYK activation is triggered when the tSH2 domains bind to a phosphorylated immunoreceptor tyrosine-based activation motif (ITAM) found on receptor tails. Past mutational studies have indicated that ITAM binding disrupts the hinge-kinase interaction, leading to SYK phosphorylation and activation. However, the mechanism of this process is unclear, as the ITAM interaction occurs far from the hinge region. We have determined crystal structures of three phospho-ITAMs in complex with the tSH2 domains, revealing a highly conserved binding mechanism. These structures, together with mutational studies and biophysical analyses, reveal that phospho-ITAM binding restricts SH2 domain movement and causes allosteric changes in the hinge region. These changes are not compatible with the association of the kinase domain, leading to kinase activation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures