7Q4I image
Deposition Date 2021-10-31
Release Date 2022-04-13
Last Version Date 2024-05-01
Entry Detail
PDB ID:
7Q4I
Keywords:
Title:
Crystal structure of DmC1GalT1 in complex with UDP-Mn2+ and the APD-TGalNAc-RP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Gene (Uniprot):C1GalTA
Chain IDs:A, B
Chain Length:316
Number of Molecules:2
Biological Source:Drosophila melanogaster
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mucin-1
Gene (Uniprot):MUC1
Chain IDs:C (auth: G), D (auth: F)
Chain Length:6
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LPD C PRO modified residue
Primary Citation
Structural basis for the synthesis of the core 1 structure by C1GalT1.
Nat Commun 13 2398 2398 (2022)
PMID: 35504880 DOI: 10.1038/s41467-022-29833-0

Abstact

C1GalT1 is an essential inverting glycosyltransferase responsible for synthesizing the core 1 structure, a common precursor for mucin-type O-glycans found in many glycoproteins. To date, the structure of C1GalT1 and the details of substrate recognition and catalysis remain unknown. Through biophysical and cellular studies, including X-ray crystallography of C1GalT1 complexed to a glycopeptide, we report that C1GalT1 is an obligate GT-A fold dimer that follows a SN2 mechanism. The binding of the glycopeptides to the enzyme is mainly driven by the GalNAc moiety while the peptide sequence provides optimal kinetic and binding parameters. Interestingly, to achieve glycosylation, C1GalT1 recognizes a high-energy conformation of the α-GalNAc-Thr linkage, negligibly populated in solution. By imposing this 3D-arrangement on that fragment, characteristic of α-GalNAc-Ser peptides, C1GalT1 ensures broad glycosylation of both acceptor substrates. These findings illustrate a structural and mechanistic blueprint to explain glycosylation of multiple acceptor substrates, extending the repertoire of mechanisms adopted by glycosyltransferases.

Legend

Protein

Chemical

Disease

Primary Citation of related structures