7Q4G image
Deposition Date 2021-10-30
Release Date 2022-02-23
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7Q4G
Title:
Structure of coproheme decarboxylase from Corynebacterium dipththeriae Y135A mutant in complex with coproheme
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.82 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Coproheme decarboxylase from Corynebacterium diphtheriae Y135A mutant in complex with coproheme
Mutations:Y135A
Chain IDs:A, B, C, D, E
Chain Length:237
Number of Molecules:5
Biological Source:Corynebacterium diphtheriae
Primary Citation
Initial Steps to Engineer Coproheme Decarboxylase to Obtain Stereospecific Monovinyl, Monopropionyl Deuterohemes.
Front Bioeng Biotechnol 9 807678 807678 (2021)
PMID: 35141216 DOI: 10.3389/fbioe.2021.807678

Abstact

The oxidative decarboxylation of coproheme to form heme b by coproheme decarboxylase is a stereospecific two-step reaction. In the first step, the propionate at position two (p2) is cleaved off the pyrrole ring A to form a vinyl group at this position. Subsequently, the propionate at position four (p4) on pyrrole ring B is cleaved off and heme b is formed. In this study, we attempted to engineer coproheme decarboxylase from Corynebacterium diphtheriae to alter the stereospecificity of this reaction. By introducing a tyrosine residue in proximity to the propionate at position 4, we were able to create a new radical center in the active site. However, the artificial Tyr183• radical could not be shown to catalyze any decarboxylation.

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Primary Citation of related structures