7Q21 image
Deposition Date 2021-10-22
Release Date 2022-02-02
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7Q21
Title:
III2-IV2 respiratory supercomplex from Corynebacterium glutamicum
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome bc1 complex Rieske iron-sulfur subunit
Gene (Uniprot):qcrA
Chain IDs:G (auth: A), Q (auth: a)
Chain Length:408
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Cytochrome bc1 complex cytochrome b subunit
Gene (Uniprot):qcrB
Chain IDs:I (auth: B), S (auth: b)
Chain Length:539
Number of Molecules:2
Biological Source:Corynebacterium glutamicum ATCC 13032
Polymer Type:polypeptide(L)
Molecule:Cytochrome bc1 complex cytochrome c subunit
Gene (Uniprot):qcrC
Chain IDs:J (auth: C), T (auth: c)
Chain Length:283
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 1
Gene (Uniprot):ctaD
Chain IDs:F (auth: D), P (auth: d)
Chain Length:594
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 3
Gene (Uniprot):ctaE
Chain IDs:B (auth: E), L (auth: e)
Chain Length:205
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase polypeptide 4
Gene (Uniprot):ctaF
Chain IDs:D (auth: F), N (auth: f)
Chain Length:143
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 2
Gene (Uniprot):ctaC
Chain IDs:E (auth: G), O (auth: g)
Chain Length:359
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Uncharacterized membrane protein Cgl2017/cg2211
Gene (Uniprot):Cgl2017, cg2211
Chain IDs:C (auth: H), M (auth: h)
Chain Length:147
Number of Molecules:2
Biological Source:Corynebacterium glutamicum ATCC 13032
Polymer Type:polypeptide(L)
Molecule:Hypothetical membrane protein
Gene (Uniprot):Cgl0673
Chain IDs:Y (auth: K), Z (auth: k)
Chain Length:65
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein Cgl2664/cg2949
Gene (Uniprot):Cgl2664, cg2949
Chain IDs:H (auth: L), R (auth: l)
Chain Length:194
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Actinobacterial supercomplex, subunit C (AscC)
Gene (Uniprot):Cgl0818
Chain IDs:W (auth: V), X (auth: v)
Chain Length:73
Number of Molecules:2
Biological Source:Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
Polymer Type:polypeptide(L)
Molecule:Co-purified unknown peptide built as polyALA (AscE)
Chain IDs:U (auth: X)
Chain Length:22
Number of Molecules:1
Biological Source:Corynebacterium glutamicum ATCC 13032
Polymer Type:polypeptide(L)
Molecule:Co-purified unknown transmembrane helices built as polyALA (AscD)
Chain IDs:A (auth: Y), K (auth: y)
Chain Length:96
Number of Molecules:2
Biological Source:Corynebacterium glutamicum ATCC 13032
Polymer Type:polypeptide(L)
Molecule:Co-purified unknown peptide built as polyALA (AscE)
Chain IDs:V (auth: x)
Chain Length:22
Number of Molecules:1
Biological Source:Corynebacterium glutamicum ATCC 13032
Primary Citation
The respiratory supercomplex from C. glutamicum.
Structure 30 338 ? (2022)
PMID: 34910901 DOI: 10.1016/j.str.2021.11.008

Abstact

Corynebacterium glutamicum is a preferentially aerobic gram-positive bacterium belonging to the phylum Actinobacteria, which also includes the pathogen Mycobacterium tuberculosis. In these bacteria, respiratory complexes III and IV form a CIII2CIV2 supercomplex that catalyzes oxidation of menaquinol and reduction of dioxygen to water. We isolated the C. glutamicum supercomplex and used cryo-EM to determine its structure at 2.9 Å resolution. The structure shows a central CIII2 dimer flanked by a CIV on two sides. A menaquinone is bound in each of the QN and QP sites in each CIII and an additional menaquinone is positioned ∼14 Å from heme bL. A di-heme cyt. cc subunit electronically connects each CIII with an adjacent CIV, with the Rieske iron-sulfur protein positioned with the iron near heme bL. Multiple subunits interact to form a convoluted sub-structure at the cytoplasmic side of the supercomplex, which defines a path for proton transfer into CIV.

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Primary Citation of related structures