7Q08 image
Entry Detail
PDB ID:
7Q08
EMDB ID:
Keywords:
Title:
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-10-14
Release Date:
2022-05-25
Method Details:
Experimental Method:
Resolution:
2.56 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L20
Chain IDs:U (auth: 0)
Chain Length:172
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polyribonucleotide
Description:25S ribosomal RNA
Chain IDs:A (auth: 1)
Chain Length:3359
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L21A
Chain IDs:V (auth: 2)
Chain Length:160
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:B (auth: 3)
Chain Length:121
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polyribonucleotide
Description:5.8S ribosomal RNA
Chain IDs:C (auth: 4)
Chain Length:158
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L22B
Chain IDs:W (auth: 5)
Chain Length:124
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L23B
Chain IDs:X (auth: 6)
Chain Length:137
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L24A
Chain IDs:Y (auth: 7)
Chain Length:155
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L25
Chain IDs:Z (auth: 8)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L26B
Chain IDs:AA (auth: 9)
Chain Length:127
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polyribonucleotide
Description:18S ribosomal RNA
Chain IDs:TA (auth: A)
Chain Length:105
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:BA (auth: AA)
Chain Length:136
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L28
Chain IDs:CA (auth: AB)
Chain Length:149
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L29
Chain IDs:DA (auth: AC)
Chain Length:63
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L30
Chain IDs:EA (auth: AD)
Chain Length:106
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L31B
Chain IDs:FA (auth: AE)
Chain Length:112
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L32
Chain IDs:GA (auth: AF)
Chain Length:131
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L33A
Chain IDs:HA (auth: AG)
Chain Length:107
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L34B
Chain IDs:IA (auth: AH)
Chain Length:122
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L35A
Chain IDs:JA (auth: AI)
Chain Length:120
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:KA (auth: AJ)
Chain Length:99
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal protein L37
Chain IDs:LA (auth: AK)
Chain Length:90
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L38
Chain IDs:MA (auth: AL)
Chain Length:78
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L39
Chain IDs:NA (auth: AM)
Chain Length:51
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Rpl40bp
Chain IDs:OA (auth: AN)
Chain Length:52
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein eL41
Chain IDs:PA (auth: AO)
Chain Length:25
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L42A
Chain IDs:QA (auth: AP)
Chain Length:106
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L43A
Chain IDs:RA (auth: AQ)
Chain Length:92
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S0
Chain IDs:UA (auth: B)
Chain Length:261
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S1
Chain IDs:VA (auth: C)
Chain Length:82
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S2
Chain IDs:WA (auth: D)
Chain Length:249
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S3
Chain IDs:XA (auth: E)
Chain Length:251
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4
Chain IDs:YA (auth: F)
Chain Length:262
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S5
Chain IDs:ZA (auth: G)
Chain Length:193
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:AB (auth: H)
Chain Length:317
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S7
Chain IDs:BB (auth: I)
Chain Length:186
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:CB (auth: J)
Chain Length:254
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S9B
Chain IDs:DB (auth: K)
Chain Length:389
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S10A
Chain IDs:EB (auth: L)
Chain Length:118
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S11A
Chain IDs:FB (auth: M)
Chain Length:298
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S12
Chain IDs:GB (auth: N)
Chain Length:143
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S13
Chain IDs:HB (auth: O)
Chain Length:241
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S14B
Chain IDs:IB (auth: P)
Chain Length:132
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S15
Chain IDs:JB (auth: Q)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S16A
Chain IDs:KB (auth: R)
Chain Length:220
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S17B
Chain IDs:LB (auth: S)
Chain Length:174
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S18B
Chain IDs:MB (auth: T)
Chain Length:202
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S19A
Chain IDs:NB (auth: U)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S20
Chain IDs:OB (auth: V)
Chain Length:119
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S21
Chain IDs:PB (auth: W)
Chain Length:200
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S22-A
Chain IDs:QB (auth: X)
Chain Length:130
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S23B
Chain IDs:RB (auth: Y)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24
Chain IDs:SB (auth: Z)
Chain Length:135
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25
Chain IDs:TB (auth: a)
Chain Length:105
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26
Chain IDs:UB (auth: b)
Chain Length:261
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27
Chain IDs:VB (auth: c)
Chain Length:82
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S28B
Chain IDs:WB (auth: d)
Chain Length:249
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 40S subunit protein S29A
Chain IDs:XB (auth: e)
Chain Length:251
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30
Chain IDs:YB (auth: f)
Chain Length:262
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
Chain IDs:ZB (auth: g)
Chain Length:193
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein subunit beta-like protein
Chain IDs:AC (auth: h)
Chain Length:317
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:HABP4_PAI-RBP1 domain-containing protein
Chain IDs:SA (auth: i)
Chain Length:186
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L2A
Chain IDs:D (auth: j)
Chain Length:254
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L3
Chain IDs:E (auth: k)
Chain Length:389
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L4B
Chain IDs:F (auth: l)
Chain Length:118
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L5
Chain IDs:G (auth: m)
Chain Length:298
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:H (auth: n)
Chain Length:143
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L7A
Chain IDs:I (auth: o)
Chain Length:241
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8
Chain IDs:J (auth: p)
Chain Length:132
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L9B
Chain IDs:K (auth: q)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L10
Chain IDs:L (auth: r)
Chain Length:220
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L11B
Chain IDs:M (auth: s)
Chain Length:174
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13
Chain IDs:N (auth: t)
Chain Length:202
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L14B
Chain IDs:O (auth: u)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal protein L15
Chain IDs:P (auth: v)
Chain Length:119
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L16A
Chain IDs:Q (auth: w)
Chain Length:200
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L17B
Chain IDs:R (auth: x)
Chain Length:130
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal 60S subunit protein L18A
Chain IDs:S (auth: y)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans SC5314
Polymer Type:polypeptide(L)
Description:Ribosomal protein L19
Chain IDs:T (auth: z)
Chain Length:135
Number of Molecules:1
Biological Source:Candida albicans SC5314
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLZ X LYS modified residue
OMC A C modified residue
OMG A G modified residue
Primary Citation
E-site drug specificity of the human pathogen Candida albicans ribosome.
Sci Adv 8 eabn1062 eabn1062 (2022)
PMID: 35613268 DOI: 10.1126/sciadv.abn1062

Abstact

Candida albicans is a widespread commensal fungus with substantial pathogenic potential and steadily increasing resistance to current antifungal drugs. It is known to be resistant to cycloheximide (CHX) that binds to the E-transfer RNA binding site of the ribosome. Because of lack of structural information, it is neither possible to understand the nature of the resistance nor to develop novel inhibitors. To overcome this issue, we determined the structure of the vacant C. albicans 80S ribosome at 2.3 angstroms and its complexes with bound inhibitors at resolutions better than 2.9 angstroms using cryo-electron microscopy. Our structures reveal how a change in a conserved amino acid in ribosomal protein eL42 explains CHX resistance in C. albicans and forms a basis for further antifungal drug development.

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Chemical

Disease

Primary Citation of related structures