7PZD image
Deposition Date 2021-10-12
Release Date 2022-04-20
Last Version Date 2024-07-17
Entry Detail
PDB ID:
7PZD
Keywords:
Title:
Cryo-EM structure of the NLRP3 PYD filament
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NACHT, LRR and PYD domains-containing protein 3
Gene (Uniprot):NLRP3
Chain IDs:A (auth: G), B (auth: H), C (auth: I), D (auth: J), E (auth: K), F (auth: L), G (auth: M), H (auth: N), I (auth: O), J (auth: P), K (auth: Q), L (auth: R), M (auth: S), N (auth: T), O (auth: U), P (auth: V), Q (auth: W), R (auth: X)
Chain Length:108
Number of Molecules:18
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Directionality of PYD filament growth determined by the transition of NLRP3 nucleation seeds to ASC elongation.
Sci Adv 8 eabn7583 eabn7583 (2022)
PMID: 35559676 DOI: 10.1126/sciadv.abn7583

Abstact

Inflammasomes sense intrinsic and extrinsic danger signals to trigger inflammatory responses and pyroptotic cell death. Homotypic pyrin domain (PYD) interactions of inflammasome forming nucleotide-binding oligomerization domain (NOD)-like receptors with the adaptor protein ASC (apoptosis-associated speck-like protein containing a CARD) mediate oligomerization into filamentous assemblies. We describe the cryo-electron microscopy (cryo-EM) structure of the human NLRP3PYD filament and identify a pattern of highly polar interface residues that form the homomeric interactions leading to characteristic filament ends designated as A- and B-ends. Coupling a titration polymerization assay to cryo-EM, we demonstrate that ASC adaptor protein elongation on NLRP3PYD nucleation seeds is unidirectional, associating exclusively to the B-end of the filament. Notably, NLRP3 and ASC PYD filaments exhibit the same symmetry in rotation and axial rise per subunit, allowing a continuous transition between NLRP3 and ASC. Integrating the directionality of filament growth, we present a molecular model of the ASC speck consisting of active NLRP3, ASC, and Caspase-1 proteins.

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