7PWG image
Deposition Date 2021-10-06
Release Date 2022-04-20
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7PWG
Keywords:
Title:
Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:rRNA 28S
Chain IDs:A (auth: 1)
Chain Length:2707
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polyribonucleotide
Molecule:rRNA 5S
Chain IDs:B (auth: 3)
Chain Length:120
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polyribonucleotide
Molecule:rRNA 5.8S
Chain IDs:C (auth: 4)
Chain Length:139
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L2
Gene (Uniprot):GL50803_0016086
Chain IDs:D (auth: A)
Chain Length:251
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L3
Gene (Uniprot):GL50803_0016525
Chain IDs:E (auth: B)
Chain Length:62
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L4
Gene (Uniprot):GL50803_0017547
Chain IDs:F (auth: C)
Chain Length:316
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L5
Gene (Uniprot):GL50803_0017395
Chain IDs:G (auth: D)
Chain Length:106
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polyribonucleotide
Molecule:P-site tRNA
Chain IDs:RA (auth: E)
Chain Length:3
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L7
Gene (Uniprot):GL50803_0019436
Chain IDs:H (auth: F)
Chain Length:123
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Gene (Uniprot):GL50803_0017244
Chain IDs:I (auth: G)
Chain Length:120
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L6
Gene (Uniprot):GL50803_0017056
Chain IDs:J (auth: H)
Chain Length:185
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L10
Gene (Uniprot):GL50803_0010428
Chain IDs:K (auth: I)
Chain Length:90
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L11
Gene (Uniprot):GL50803_005593
Chain IDs:L (auth: J)
Chain Length:173
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Chain IDs:M (auth: L)
Chain Length:51
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L14
Gene (Uniprot):GL50803_0014091
Chain IDs:N (auth: M)
Chain Length:127
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):GL50803_008001
Chain IDs:O (auth: N)
Chain Length:204
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L13a
Gene (Uniprot):GL50803_0011247
Chain IDs:P (auth: O)
Chain Length:197
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L17
Gene (Uniprot):GL50803_0098056
Chain IDs:Q (auth: P)
Chain Length:164
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L18
Gene (Uniprot):GL50803_0011950
Chain IDs:R (auth: Q)
Chain Length:179
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):GL50803_0016431
Chain IDs:S (auth: R)
Chain Length:196
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18a
Chain IDs:T (auth: S)
Chain Length:173
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L21
Gene (Uniprot):GL50803_0015520
Chain IDs:U (auth: T)
Chain Length:159
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eL22
Chain IDs:V (auth: U)
Chain Length:171
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L23
Gene (Uniprot):GL50803_0010091
Chain IDs:W (auth: V)
Chain Length:142
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L24A
Gene (Uniprot):GL50803_0019003
Chain IDs:QA (auth: W)
Chain Length:76
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L23A
Gene (Uniprot):GL50803_007870
Chain IDs:X
Chain Length:141
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L26
Gene (Uniprot):GL50803_0015046
Chain IDs:Y
Chain Length:135
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):GL50803_008462
Chain IDs:Z
Chain Length:135
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L27a
Gene (Uniprot):GL50803_0016310
Chain IDs:AA (auth: a)
Chain Length:251
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):GL50803_0014457
Chain IDs:BA (auth: b)
Chain Length:62
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L30
Gene (Uniprot):GL50803_0014321
Chain IDs:CA (auth: c)
Chain Length:316
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L31B
Gene (Uniprot):GL50803_0016368
Chain IDs:DA (auth: d)
Chain Length:106
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L32
Gene (Uniprot):GL50803_0014049
Chain IDs:EA (auth: e)
Chain Length:3
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L35a
Gene (Uniprot):GL50803_005947
Chain IDs:FA (auth: f)
Chain Length:123
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L34
Gene (Uniprot):GL50803_0036069
Chain IDs:GA (auth: g)
Chain Length:120
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L29
Gene (Uniprot):GL50803_006133
Chain IDs:HA (auth: h)
Chain Length:185
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L36-1
Gene (Uniprot):GL50803_0016114
Chain IDs:IA (auth: i)
Chain Length:90
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):GL50803_0014171
Chain IDs:JA (auth: j)
Chain Length:173
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal L38e
Gene (Uniprot):GL50803_0034093
Chain IDs:KA (auth: k)
Chain Length:77
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L39
Gene (Uniprot):GL50803_0060191
Chain IDs:LA (auth: l)
Chain Length:51
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ubiquitin/Ribosomal protein L40e
Gene (Uniprot):GL50803_005665
Chain IDs:MA (auth: m)
Chain Length:127
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L44
Gene (Uniprot):GL50803_009810
Chain IDs:NA (auth: o)
Chain Length:197
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37a
Gene (Uniprot):GL50803_005517
Chain IDs:OA (auth: p)
Chain Length:164
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polyribonucleotide
Molecule:E-site tRNA
Chain IDs:PA (auth: w)
Chain Length:76
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OMG C G modified residue
Primary Citation
Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.
Nucleic Acids Res. 50 1770 1782 (2022)
PMID: 35100413 DOI: 10.1093/nar/gkac046

Abstact

Giardiasis is a disease caused by the protist Giardia lamblia. As no human vaccines have been approved so far against it, and resistance to current drugs is spreading, new strategies for combating giardiasis need to be developed. The G. lamblia ribosome may provide a promising therapeutic target due to its distinct sequence differences from ribosomes of most eukaryotes and prokaryotes. Here, we report the cryo-electron microscopy structure of the G. lamblia (WB strain) ribosome determined at 2.75 Å resolution. The ribosomal RNA is the shortest known among eukaryotes, and lacks nearly all the eukaryote-specific ribosomal RNA expansion segments. In contrast, the ribosomal proteins are typically eukaryotic with some species-specific insertions/extensions. Most typical inter-subunit bridges are maintained except for one missing contact site. Unique structural features are located mainly at the ribosome's periphery. These may be exploited as target sites for the design of new compounds that inhibit selectively the parasite's ribosomal activity.

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Disease

Primary Citation of related structures