7PWF image
Entry Detail
PDB ID:
7PWF
EMDB ID:
Keywords:
Title:
Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolution
Biological Source:
PDB Version:
Deposition Date:
2021-10-06
Release Date:
2022-05-25
Method Details:
Experimental Method:
Resolution:
2.85 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:rRNA 18S
Chain IDs:BA (auth: 2)
Chain Length:1452
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein SA
Chain IDs:J (auth: A)
Chain Length:109
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3a
Chain IDs:K (auth: B)
Chain Length:248
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S2
Chain IDs:I (auth: C)
Chain Length:242
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S3
Chain IDs:E (auth: D)
Chain Length:137
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4
Chain IDs:AA (auth: E)
Chain Length:268
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S5
Chain IDs:FA (auth: F)
Chain Length:190
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:EA (auth: G)
Chain Length:248
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein eS7
Chain IDs:V (auth: H)
Chain Length:190
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:T (auth: I)
Chain Length:174
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S9
Chain IDs:D (auth: J)
Chain Length:189
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S10B
Chain IDs:S (auth: K)
Chain Length:134
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:SSU ribosomal protein S17P
Chain IDs:CA (auth: L)
Chain Length:199
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S13
Chain IDs:C (auth: N)
Chain Length:41
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S14
Chain IDs:Y (auth: O)
Chain Length:145
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S15
Chain IDs:Q (auth: P)
Chain Length:145
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S16
Chain IDs:H (auth: Q)
Chain Length:158
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S17
Chain IDs:R
Chain Length:137
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S18
Chain IDs:G (auth: S)
Chain Length:154
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S19e
Chain IDs:B (auth: T)
Chain Length:139
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S20
Chain IDs:DA (auth: U)
Chain Length:126
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S21
Chain IDs:P (auth: V)
Chain Length:89
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S15A
Chain IDs:Z (auth: W)
Chain Length:130
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S23
Chain IDs:F (auth: X)
Chain Length:143
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S24
Chain IDs:L (auth: Y)
Chain Length:132
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25
Chain IDs:O (auth: Z)
Chain Length:88
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26
Chain IDs:N (auth: a)
Chain Length:109
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S27
Chain IDs:M (auth: b)
Chain Length:248
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S28
Chain IDs:X (auth: c)
Chain Length:242
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein S29A
Chain IDs:A (auth: d)
Chain Length:137
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30
Chain IDs:U (auth: e)
Chain Length:268
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Description:Ribosomal protein eL41
Chain IDs:W (auth: n)
Chain Length:41
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Primary Citation
Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.
Nucleic Acids Res. 50 1770 1782 (2022)
PMID: 35100413 DOI: 10.1093/nar/gkac046

Abstact

Giardiasis is a disease caused by the protist Giardia lamblia. As no human vaccines have been approved so far against it, and resistance to current drugs is spreading, new strategies for combating giardiasis need to be developed. The G. lamblia ribosome may provide a promising therapeutic target due to its distinct sequence differences from ribosomes of most eukaryotes and prokaryotes. Here, we report the cryo-electron microscopy structure of the G. lamblia (WB strain) ribosome determined at 2.75 Å resolution. The ribosomal RNA is the shortest known among eukaryotes, and lacks nearly all the eukaryote-specific ribosomal RNA expansion segments. In contrast, the ribosomal proteins are typically eukaryotic with some species-specific insertions/extensions. Most typical inter-subunit bridges are maintained except for one missing contact site. Unique structural features are located mainly at the ribosome's periphery. These may be exploited as target sites for the design of new compounds that inhibit selectively the parasite's ribosomal activity.

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Primary Citation of related structures