7PWF image
Deposition Date 2021-10-06
Release Date 2022-05-25
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7PWF
Keywords:
Title:
Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:rRNA 18S
Chain IDs:BA (auth: 2)
Chain Length:1452
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein SA
Gene (Uniprot):GL50803_7766
Chain IDs:J (auth: A)
Chain Length:109
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3a
Gene (Uniprot):GL50803_16265
Chain IDs:K (auth: B)
Chain Length:248
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S2
Gene (Uniprot):GL50803_008118
Chain IDs:I (auth: C)
Chain Length:242
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S3
Gene (Uniprot):GL50803_007999
Chain IDs:E (auth: D)
Chain Length:137
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):GL50803_0011359
Chain IDs:AA (auth: E)
Chain Length:268
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S5
Gene (Uniprot):GL50803_0012981
Chain IDs:FA (auth: F)
Chain Length:190
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):GL50803_0014620
Chain IDs:EA (auth: G)
Chain Length:248
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eS7
Chain IDs:V (auth: H)
Chain Length:190
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):GL50803_005845
Chain IDs:T (auth: I)
Chain Length:174
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S9
Gene (Uniprot):GL50803_004547
Chain IDs:D (auth: J)
Chain Length:189
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S10B
Gene (Uniprot):GL50803_0010919
Chain IDs:S (auth: K)
Chain Length:134
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:SSU ribosomal protein S17P
Gene (Uniprot):GSB_14827
Chain IDs:CA (auth: L)
Chain Length:199
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S13
Gene (Uniprot):GL50803_0016652
Chain IDs:C (auth: N)
Chain Length:41
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S14
Gene (Uniprot):GL50803_007878
Chain IDs:Y (auth: O)
Chain Length:145
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S15
Gene (Uniprot):GL50803_0015260
Chain IDs:Q (auth: P)
Chain Length:145
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S16
Gene (Uniprot):GL50803_004652
Chain IDs:H (auth: Q)
Chain Length:158
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S17
Gene (Uniprot):GL50803_006135
Chain IDs:R
Chain Length:137
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S18
Gene (Uniprot):GL50803_0015551
Chain IDs:G (auth: S)
Chain Length:154
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S19e
Gene (Uniprot):GL50803_0060211
Chain IDs:B (auth: T)
Chain Length:139
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S20
Gene (Uniprot):GL50803_006022
Chain IDs:DA (auth: U)
Chain Length:126
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21
Gene (Uniprot):GL50803_007082
Chain IDs:P (auth: V)
Chain Length:89
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S15A
Gene (Uniprot):GL50803_0015228
Chain IDs:Z (auth: W)
Chain Length:130
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S23
Gene (Uniprot):GL50803_0014699
Chain IDs:F (auth: X)
Chain Length:143
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S24
Gene (Uniprot):GL50803_0010367
Chain IDs:L (auth: Y)
Chain Length:132
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):GL50803_0013268
Chain IDs:O (auth: Z)
Chain Length:88
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):GL50803_0017364
Chain IDs:N (auth: a)
Chain Length:109
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S27
Chain IDs:M (auth: b)
Chain Length:248
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S28
Gene (Uniprot):GL50803_003570
Chain IDs:X (auth: c)
Chain Length:242
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S29A
Chain IDs:A (auth: d)
Chain Length:137
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S30
Gene (Uniprot):GL50803_0060147
Chain IDs:U (auth: e)
Chain Length:268
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eL41
Chain IDs:W (auth: n)
Chain Length:41
Number of Molecules:1
Biological Source:Giardia lamblia ATCC 50803
Primary Citation
Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.
Nucleic Acids Res. 50 1770 1782 (2022)
PMID: 35100413 DOI: 10.1093/nar/gkac046

Abstact

Giardiasis is a disease caused by the protist Giardia lamblia. As no human vaccines have been approved so far against it, and resistance to current drugs is spreading, new strategies for combating giardiasis need to be developed. The G. lamblia ribosome may provide a promising therapeutic target due to its distinct sequence differences from ribosomes of most eukaryotes and prokaryotes. Here, we report the cryo-electron microscopy structure of the G. lamblia (WB strain) ribosome determined at 2.75 Å resolution. The ribosomal RNA is the shortest known among eukaryotes, and lacks nearly all the eukaryote-specific ribosomal RNA expansion segments. In contrast, the ribosomal proteins are typically eukaryotic with some species-specific insertions/extensions. Most typical inter-subunit bridges are maintained except for one missing contact site. Unique structural features are located mainly at the ribosome's periphery. These may be exploited as target sites for the design of new compounds that inhibit selectively the parasite's ribosomal activity.

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