7PUL image
Entry Detail
PDB ID:
7PUL
Keywords:
Title:
Crystal structure of Endoglycosidase E GH20 domain from Enterococcus faecalis
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-09-30
Release Date:
2022-03-16
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-N-acetylhexosaminidase
Chain IDs:A
Chain Length:355
Number of Molecules:1
Biological Source:Enterococcus faecalis
Polymer Type:polypeptide(L)
Description:GLY-ALA-GLY-ALA-ALA
Chain IDs:B (auth: P)
Chain Length:5
Number of Molecules:1
Biological Source:Enterococcus faecalis
Primary Citation
Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE.
Nat Commun 13 1137 1137 (2022)
PMID: 35241669 DOI: 10.1038/s41467-022-28722-w

Abstact

Bacteria produce a remarkably diverse range of glycoside hydrolases to metabolize glycans from the environment as a primary source of nutrients, and to promote the colonization and infection of a host. Here we focus on EndoE, a multi-modular glycoside hydrolase secreted by Enterococcus faecalis, one of the leading causes of healthcare-associated infections. We provide X-ray crystal structures of EndoE, which show an architecture composed of four domains, including GH18 and GH20 glycoside hydrolases connected by two consecutive three α-helical bundles. We determine that the GH20 domain is an exo-β-1,2-N-acetylglucosaminidase, whereas the GH18 domain is an endo-β-1,4-N-acetylglucosaminidase that exclusively processes the central core of complex-type or high-mannose-type N-glycans. Both glycoside hydrolase domains act in a concerted manner to process diverse N-glycans on glycoproteins, including therapeutic IgG antibodies. EndoE combines two enzyme domains with distinct functions and glycan specificities to play a dual role in glycan metabolism and immune evasion.

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