7PT6 image
Entry Detail
PDB ID:
7PT6
EMDB ID:
Keywords:
Title:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III
Biological Source:
PDB Version:
Deposition Date:
2021-09-26
Release Date:
2022-06-08
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Undefined Mcm4 flexible N-terminal tail
Chain IDs:A (auth: 1), J (auth: A)
Chain Length:4
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM2
Chain IDs:B (auth: 2), K (auth: B)
Chain Length:868
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM3
Chain IDs:C (auth: 3), L (auth: C)
Chain Length:971
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM4
Chain IDs:D (auth: 4), M (auth: D)
Chain Length:933
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:Minichromosome maintenance protein 5
Chain IDs:E (auth: 5), N (auth: E)
Chain Length:775
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM6
Chain IDs:F (auth: 6), O (auth: F)
Chain Length:1017
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM7
Chain IDs:G (auth: 7), P (auth: G)
Chain Length:845
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:Cell division control protein 7
Chain IDs:H (auth: 8), Q (auth: H)
Chain Length:507
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:DDK kinase regulatory subunit DBF4
Chain IDs:I (auth: 9), R (auth: I)
Chain Length:704
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer.
Nat Commun 13 2915 2915 (2022)
PMID: 35614055 DOI: 10.1038/s41467-022-30576-1

Abstact

The controlled assembly of replication forks is critical for genome stability. The Dbf4-dependent Cdc7 kinase (DDK) initiates replisome assembly by phosphorylating the MCM2-7 replicative helicase at the N-terminal tails of Mcm2, Mcm4 and Mcm6. At present, it remains poorly understood how DDK docks onto the helicase and how the kinase targets distal Mcm subunits for phosphorylation. Using cryo-electron microscopy and biochemical analysis we discovered that an interaction between the HBRCT domain of Dbf4 with Mcm2 serves as an anchoring point, which supports binding of DDK across the MCM2-7 double-hexamer interface and phosphorylation of Mcm4 on the opposite hexamer. Moreover, a rotation of DDK along its anchoring point allows phosphorylation of Mcm2 and Mcm6. In summary, our work provides fundamental insights into DDK structure, control and selective activation of the MCM2-7 helicase during DNA replication. Importantly, these insights can be exploited for development of novel DDK inhibitors.

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