7PR9 image
Entry Detail
PDB ID:
7PR9
Keywords:
Title:
Crystal structure of Burkholderia pseudomallei heparanase in complex with covalent inhibitor VL166
Biological Source:
PDB Version:
Deposition Date:
2021-09-21
Release Date:
2022-08-03
Method Details:
Experimental Method:
Resolution:
1.34 Å
R-Value Free:
0.19
R-Value Work:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glyco_hydro_44 domain-containing protein
Chain IDs:A, B
Chain Length:438
Number of Molecules:2
Biological Source:Burkholderia pseudomallei (strain K96243)
Ligand Molecules
Primary Citation
Mechanism-based heparanase inhibitors reduce cancer metastasis in vivo.
Proc.Natl.Acad.Sci.USA 119 e2203167119 e2203167119 (2022)
PMID: 35881786 DOI: 10.1073/pnas.2203167119

Abstact

Heparan sulfate proteoglycans (HSPGs) mediate essential interactions throughout the extracellular matrix (ECM), providing signals that regulate cellular growth and development. Altered HSPG composition during tumorigenesis strongly aids cancer progression. Heparanase (HPSE) is the principal enzyme responsible for extracellular heparan sulfate catabolism and is markedly up-regulated in aggressive cancers. HPSE overactivity degrades HSPGs within the ECM, facilitating metastatic dissemination and releasing mitogens that drive cellular proliferation. Reducing extracellular HPSE activity reduces cancer growth, but few effective inhibitors are known, and none are clinically approved. Inspired by the natural glycosidase inhibitor cyclophellitol, we developed nanomolar mechanism-based, irreversible HPSE inhibitors that are effective within physiological environments. Application of cyclophellitol-derived HPSE inhibitors reduces cancer aggression in cellulo and significantly ameliorates murine metastasis. Mechanism-based irreversible HPSE inhibition is an unexplored anticancer strategy. We demonstrate the feasibility of such compounds to control pathological HPSE-driven malignancies.

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Primary Citation of related structures