7PQD image
Deposition Date 2021-09-17
Release Date 2021-11-24
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7PQD
Keywords:
Title:
Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 A: the structural basis for dimerisation
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LH1-alpha
Chain IDs:A (auth: AA), B (auth: AB), C (auth: AC), D (auth: AD), E (auth: AE), F (auth: AF), G (auth: AG), H (auth: AH), I (auth: AI), J (auth: AJ), K (auth: AK), L (auth: AL), M (auth: AM), N (auth: AN), JA (auth: aa), KA (auth: ab), LA (auth: ac), MA (auth: ad), NA (auth: ae), OA (auth: af), PA (auth: ag), QA (auth: ah), RA (auth: ai), SA (auth: aj), TA (auth: ak), UA (auth: al), VA (auth: am), WA (auth: an)
Chain Length:58
Number of Molecules:28
Biological Source:Cereibacter sphaeroides 2.4.1
Polymer Type:polypeptide(L)
Molecule:LH1-beta
Chain IDs:O (auth: BA), P (auth: BB), Q (auth: BC), R (auth: BD), S (auth: BE), T (auth: BF), U (auth: BG), V (auth: BH), W (auth: BI), X (auth: BJ), Y (auth: BK), Z (auth: BL), AA (auth: BM), BA (auth: BN), XA (auth: ba), YA (auth: bb), ZA (auth: bc), AB (auth: bd), BB (auth: be), CB (auth: bf), DB (auth: bg), EB (auth: bh), FB (auth: bi), GB (auth: bj), HB (auth: bk), IB (auth: bl), JB (auth: bm), KB (auth: bn)
Chain Length:49
Number of Molecules:28
Biological Source:Cereibacter sphaeroides 2.4.1
Polymer Type:polypeptide(L)
Molecule:RC-H
Chain IDs:CA (auth: H), LB (auth: h)
Chain Length:246
Number of Molecules:2
Biological Source:Cereibacter sphaeroides 2.4.1
Polymer Type:polypeptide(L)
Molecule:RC-L
Chain IDs:DA (auth: L), MB (auth: l)
Chain Length:281
Number of Molecules:2
Biological Source:Cereibacter sphaeroides 2.4.1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):pufM
Chain IDs:EA (auth: M), NB (auth: m)
Chain Length:307
Number of Molecules:2
Biological Source:Cereibacter sphaeroides 2.4.1
Polymer Type:polypeptide(L)
Molecule:PufZ
Chain IDs:FA (auth: UA), GA (auth: UB), OB (auth: ua), PB (auth: ub)
Chain Length:31
Number of Molecules:4
Biological Source:Cereibacter sphaeroides 2.4.1
Polymer Type:polypeptide(L)
Molecule:PufY
Chain IDs:HA (auth: UU), QB (auth: uu)
Chain Length:49
Number of Molecules:2
Biological Source:Cereibacter sphaeroides 2.4.1
Polymer Type:polypeptide(L)
Molecule:PufX
Chain IDs:IA (auth: X), RB (auth: x)
Chain Length:55
Number of Molecules:2
Biological Source:Cereibacter sphaeroides 2.4.1
Primary Citation
Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 angstrom : the structural basis for dimerisation.
Biochem.J. 478 3923 3937 (2021)
PMID: 34622934 DOI: 10.1042/BCJ20210696

Abstact

The dimeric reaction centre light-harvesting 1 (RC-LH1) core complex of Rhodobacter sphaeroides converts absorbed light energy to a charge separation, and then it reduces a quinone electron and proton acceptor to a quinol. The angle between the two monomers imposes a bent configuration on the dimer complex, which exerts a major influence on the curvature of the membrane vesicles, known as chromatophores, where the light-driven photosynthetic reactions take place. To investigate the dimerisation interface between two RC-LH1 monomers, we determined the cryogenic electron microscopy structure of the dimeric complex at 2.9 Å resolution. The structure shows that each monomer consists of a central RC partly enclosed by a 14-subunit LH1 ring held in an open state by PufX and protein-Y polypeptides, thus enabling quinones to enter and leave the complex. Two monomers are brought together through N-terminal interactions between PufX polypeptides on the cytoplasmic side of the complex, augmented by two novel transmembrane polypeptides, designated protein-Z, that bind to the outer faces of the two central LH1 β polypeptides. The precise fit at the dimer interface, enabled by PufX and protein-Z, by C-terminal interactions between opposing LH1 αβ subunits, and by a series of interactions with a bound sulfoquinovosyl diacylglycerol lipid, bring together each monomer creating an S-shaped array of 28 bacteriochlorophylls. The seamless join between the two sets of LH1 bacteriochlorophylls provides a path for excitation energy absorbed by one half of the complex to migrate across the dimer interface to the other half.

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Primary Citation of related structures
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