7PKT image
Deposition Date 2021-08-26
Release Date 2022-06-15
Last Version Date 2024-07-17
Entry Detail
PDB ID:
7PKT
Keywords:
Title:
Large subunit of the Chlamydomonas reinhardtii mitoribosome
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:L3a rRNA (5S)
Chain IDs:VA (auth: 0)
Chain Length:75
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L1 rRNA
Chain IDs:TA (auth: 1)
Chain Length:162
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L2a rRNA
Chain IDs:UA (auth: 2)
Chain Length:86
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L3b rRNA
Chain IDs:WA (auth: 3)
Chain Length:184
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L4 rRNA
Chain IDs:XA (auth: 4)
Chain Length:118
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L5 rRNA
Chain IDs:YA (auth: 5)
Chain Length:149
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L6 rRNA
Chain IDs:ZA (auth: 6)
Chain Length:136
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L7 rRNA
Chain IDs:AB (auth: 7)
Chain Length:578
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:L8 rRNA
Chain IDs:BB (auth: 8)
Chain Length:413
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bL34m
Gene (Uniprot):CHLRE_14g608970v5
Chain IDs:X (auth: A)
Chain Length:280
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bL35m
Gene (Uniprot):CHLRE_07g345850v5
Chain IDs:Y (auth: B)
Chain Length:417
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:bL36m
Chain IDs:IA (auth: C)
Chain Length:36
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL40
Gene (Uniprot):CHLRE_10g428350v5
Chain IDs:AA (auth: D)
Chain Length:216
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL41
Gene (Uniprot):CHLRE_06g291300v5
Chain IDs:BA (auth: E)
Chain Length:112
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:mL43
Chain IDs:CA (auth: F)
Chain Length:141
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein L17
Gene (Uniprot):CHLRE_03g193550v5
Chain IDs:DA (auth: G)
Chain Length:259
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL63/57/60
Gene (Uniprot):CHLRE_16g684950v5
Chain IDs:EA (auth: I)
Chain Length:277
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:mL59/64
Chain IDs:FA (auth: J)
Chain Length:134
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL80
Gene (Uniprot):CHLRE_10g461650v5
Chain IDs:GA (auth: K)
Chain Length:337
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL87
Gene (Uniprot):CHLRE_09g417100v5
Chain IDs:HA (auth: L)
Chain Length:270
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL113
Gene (Uniprot):CHLRE_03g145867v5
Chain IDs:JA (auth: M)
Chain Length:183
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL114
Gene (Uniprot):CHLRE_06g303850v5
Chain IDs:KA (auth: N)
Chain Length:455
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL115
Gene (Uniprot):CHLRE_09g392579v5
Chain IDs:LA (auth: O)
Chain Length:115
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL116
Gene (Uniprot):CHLRE_03g179901v5
Chain IDs:MA (auth: P)
Chain Length:370
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL117
Gene (Uniprot):CHLRE_14g615450v5
Chain IDs:NA (auth: Q)
Chain Length:820
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL118
Gene (Uniprot):CHLRE_04g217904v5
Chain IDs:OA (auth: R)
Chain Length:653
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mL119
Gene (Uniprot):CHLRE_12g521050v5
Chain IDs:PA (auth: S)
Chain Length:309
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Unk1
Chain IDs:QA (auth: X)
Chain Length:31
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:PPR*
Chain IDs:RA (auth: Y)
Chain Length:172
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Unk2
Chain IDs:SA (auth: Z)
Chain Length:59
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_L2_C domain-containing protein
Gene (Uniprot):CHLRE_07g348850v5
Chain IDs:A (auth: a)
Chain Length:280
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL3m
Gene (Uniprot):CHLRE_01g022250v5
Chain IDs:B (auth: b)
Chain Length:417
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL4m
Gene (Uniprot):CHLRE_12g520400v5
Chain IDs:C (auth: c)
Chain Length:36
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL5m
Gene (Uniprot):CHLRE_03g196150v5
Chain IDs:D (auth: d)
Chain Length:216
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Plastid ribosomal protein L6
Gene (Uniprot):CHLRE_09g415950v5
Chain IDs:Z (auth: e)
Chain Length:112
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L9, chloroplastic
Gene (Uniprot):CHLRE_06g307950v5
Chain IDs:E (auth: f)
Chain Length:141
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein L13
Gene (Uniprot):CHLRE_09g405200v5
Chain IDs:F (auth: i)
Chain Length:277
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL14m
Gene (Uniprot):CHLRE_12g550650v5
Chain IDs:G (auth: j)
Chain Length:134
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_L18e/L15P domain-containing protein
Gene (Uniprot):CHLRE_11g476800v5
Chain IDs:H (auth: k)
Chain Length:337
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_L16 domain-containing protein
Gene (Uniprot):CHLRE_06g278224v5
Chain IDs:I (auth: l)
Chain Length:270
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein L17,bL17m
Gene (Uniprot):CHLRE_03g181350v5
Chain IDs:J (auth: m)
Chain Length:183
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein L19
Gene (Uniprot):CHLRE_07g322500v5
Chain IDs:K (auth: n)
Chain Length:455
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L20
Gene (Uniprot):CHLRE_01g052350v5
Chain IDs:L (auth: o)
Chain Length:115
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bL21m
Gene (Uniprot):CHLRE_09g388550v5
Chain IDs:M (auth: p)
Chain Length:370
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL22m
Gene (Uniprot):CHLRE_05g242950v5
Chain IDs:N (auth: q)
Chain Length:820
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein L23
Chain IDs:O (auth: r)
Chain Length:653
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:KOW domain-containing protein,uL24m
Gene (Uniprot):CHLRE_07g330450v5
Chain IDs:P (auth: s)
Chain Length:309
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_TL5_C domain-containing protein
Gene (Uniprot):CHLRE_02g081450v5
Chain IDs:Q (auth: t)
Chain Length:366
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bL27m
Gene (Uniprot):CHLRE_01g053600v5
Chain IDs:R (auth: u)
Chain Length:173
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bL28m
Gene (Uniprot):CHLRE_13g579150v5
Chain IDs:S (auth: v)
Chain Length:153
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:uL29m
Chain IDs:T (auth: w)
Chain Length:127
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_L30 domain-containing protein
Gene (Uniprot):CHLRE_05g234659v5
Chain IDs:U (auth: x)
Chain Length:31
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bL32m
Gene (Uniprot):CHLRE_12g558750v5
Chain IDs:V (auth: y)
Chain Length:172
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein L33
Gene (Uniprot):CHLRE_16g653601v5
Chain IDs:W (auth: z)
Chain Length:59
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Primary Citation
How to build a ribosome from RNA fragments in Chlamydomonas mitochondria.
Nat Commun 12 7176 7176 (2021)
PMID: 34887394 DOI: 10.1038/s41467-021-27200-z

Abstact

Mitochondria are the powerhouse of eukaryotic cells. They possess their own gene expression machineries where highly divergent and specialized ribosomes, named hereafter mitoribosomes, translate the few essential messenger RNAs still encoded by mitochondrial genomes. Here, we present a biochemical and structural characterization of the mitoribosome in the model green alga Chlamydomonas reinhardtii, as well as a functional study of some of its specific components. Single particle cryo-electron microscopy resolves how the Chlamydomonas mitoribosome is assembled from 13 rRNA fragments encoded by separate non-contiguous gene pieces. Additional proteins, mainly OPR, PPR and mTERF helical repeat proteins, are found in Chlamydomonas mitoribosome, revealing the structure of an OPR protein in complex with its RNA binding partner. Targeted amiRNA silencing indicates that these ribosomal proteins are required for mitoribosome integrity. Finally, we use cryo-electron tomography to show that Chlamydomonas mitoribosomes are attached to the inner mitochondrial membrane via two contact points mediated by Chlamydomonas-specific proteins. Our study expands our understanding of mitoribosome diversity and the various strategies these specialized molecular machines adopt for membrane tethering.

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