7PKQ image
Deposition Date 2021-08-26
Release Date 2023-06-14
Last Version Date 2024-07-17
Entry Detail
PDB ID:
7PKQ
Keywords:
RIBOSOME
Title:
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Biological Source:
Source Organism:
Chlamydomonas reinhardtii (Taxon ID: 3055)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7PKQ validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:S1 rRNA
Chain IDs:U (auth: 1)
Chain Length:101
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:S2 rRNA
Chain IDs:W (auth: 2)
Chain Length:213
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:S3 rRNA
Chain IDs:X (auth: 3)
Chain Length:393
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polyribonucleotide
Molecule:S4 rRNA
Chain IDs:V (auth: 4)
Chain Length:415
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS35
Gene (Uniprot):CHLRE_16g650700v5
Chain IDs:A (auth: B)
Chain Length:530
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3CST5
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS45
Gene (Uniprot):CHLRE_06g254600v5
Chain IDs:B (auth: C)
Chain Length:490
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DM91
Polymer Type:polypeptide(L)
Molecule:mS45-insert
Chain IDs:C (auth: D)
Chain Length:425
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:mS31/46
Chain IDs:D (auth: K)
Chain Length:186
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS105
Gene (Uniprot):CHLRE_10g447100v5
Chain IDs:E (auth: L), F (auth: M), G (auth: N)
Chain Length:128
Number of Molecules:3
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DAY3 Pfam ID:PF02330
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS106
Gene (Uniprot):CHLRE_03g211409v5
Chain IDs:H (auth: O)
Chain Length:516
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DZV7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS107
Gene (Uniprot):CHLRE_17g743597v5
Chain IDs:I (auth: P)
Chain Length:88
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3CRX4
Polymer Type:polypeptide(L)
Molecule:Unk1
Chain IDs:J (auth: U)
Chain Length:33
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Unk2
Chain IDs:K (auth: V)
Chain Length:190
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Unk3
Chain IDs:L (auth: W)
Chain Length:54
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Unk4
Chain IDs:M (auth: X)
Chain Length:81
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Unk5
Chain IDs:N (auth: Y)
Chain Length:108
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Polymer Type:polypeptide(L)
Molecule:Unk6
Chain IDs:O (auth: Z)
Chain Length:571
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bS1m
Gene (Uniprot):CHLRE_10g432200v5
Chain IDs:Y (auth: a)
Chain Length:253
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A8IB56
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS2m
Gene (Uniprot):CHLRE_14g614950v5
Chain IDs:Z (auth: b)
Chain Length:530
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3CXL0 Pfam ID:PF00318, PF01391
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_S3_C domain-containing protein
Gene (Uniprot):CHLRE_11g467702v5
Chain IDs:QA (auth: c)
Chain Length:490
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3D7R0 Pfam ID:PF00189
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS4m
Gene (Uniprot):CHLRE_02g091450v5
Chain IDs:P (auth: d)
Chain Length:425
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3E198
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S5 DRBM domain-containing protein
Gene (Uniprot):CHLRE_09g407100v5
Chain IDs:AA (auth: e)
Chain Length:368
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DFB5 Pfam ID:PF00333, PF03719
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein S6
Gene (Uniprot):CHLRE_12g558000v5
Chain IDs:Q (auth: f)
Chain Length:122
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A8JGX6 Pfam ID:PF01250
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS7m,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing protein
Gene (Uniprot):CHLRE_14g618700v5
Chain IDs:NA (auth: g)
Chain Length:324
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3CXT8 Pfam ID:PF00177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS8m
Gene (Uniprot):CHLRE_17g696550v5
Chain IDs:GA (auth: h)
Chain Length:412
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3CNM3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S9, chloroplastic
Gene (Uniprot):CHLRE_02g106750v5
Chain IDs:OA (auth: i)
Chain Length:446
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3E2Q3 Pfam ID:PF00380
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_S10 domain-containing protein
Gene (Uniprot):CHLRE_24g755297v5
Chain IDs:IA (auth: j)
Chain Length:612
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3CN25 Pfam ID:PF00338
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS11m
Gene (Uniprot):CHLRE_06g288400v5
Chain IDs:HA (auth: k)
Chain Length:186
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DQ48 Pfam ID:PF00411
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS12m
Gene (Uniprot):CHLRE_02g144400v5
Chain IDs:FA (auth: l)
Chain Length:128
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3E3V0 Pfam ID:PF00164
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein S13
Gene (Uniprot):CHLRE_16g674350v5
Chain IDs:JA (auth: m)
Chain Length:271
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A8J3J1 Pfam ID:PF00416
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial ribosomal protein S14
Gene (Uniprot):CHLRE_17g726300v5
Chain IDs:KA (auth: n)
Chain Length:112
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A8J6P9 Pfam ID:PF00253
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS15m
Gene (Uniprot):CHLRE_17g731250v5
Chain IDs:BA (auth: o)
Chain Length:516
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3CQY8 Pfam ID:PF00312
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bS16m
Gene (Uniprot):CHLRE_10g429550v5
Chain IDs:R (auth: p)
Chain Length:88
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3D9S4 Pfam ID:PF00886
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS17m
Gene (Uniprot):CHLRE_07g337800v5
Chain IDs:EA (auth: q)
Chain Length:220
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DKB4 Pfam ID:PF00366
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bS18m
Gene (Uniprot):CHLRE_09g388282v5
Chain IDs:S (auth: r)
Chain Length:356
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DDW6 Pfam ID:PF01084
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS19m
Gene (Uniprot):CHLRE_08g375250v5
Chain IDs:MA (auth: s)
Chain Length:116
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DHN0 Pfam ID:PF00203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Plastid-specific ribosomal protein 4
Gene (Uniprot):CHLRE_09g391208v5
Chain IDs:LA (auth: u)
Chain Length:33
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A8J1A6 Pfam ID:PF17070
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS23
Gene (Uniprot):CHLRE_12g530500v5
Chain IDs:DA (auth: v)
Chain Length:190
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A8IW03
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS26
Chain IDs:T (auth: w)
Chain Length:54
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DGK2 Pfam ID:PF14943
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS29
Gene (Uniprot):CHLRE_03g176700v5
Chain IDs:PA (auth: x)
Chain Length:81
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DXG4 Pfam ID:PF10236
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS33
Gene (Uniprot):CHLRE_17g747697v5
Chain IDs:RA (auth: y)
Chain Length:108
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A8JI15
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mS34
Chain IDs:CA (auth: z)
Chain Length:571
Number of Molecules:1
Biological Source:Chlamydomonas reinhardtii
UniProt ID:A0A2K3DPT3 Pfam ID:PF16053
Ligand Molecules
NA
Primary Citation
The Chlamydomonas mitochondrial ribosome: how to build a ribosome from RNA fragments
To Be Published ? ? ? (?)
Primary Citation of related structures
7PKQ