ISDA

Entry Detail

PDB ID:

7PJS

EMDB ID:

EMD-13458

Keywords:

RIBOSOME

Title:

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Biological Source:

Source Organism:

Escherichia coli

PDB Version:

Deposition Date:

2021-08-24

Release Date:

2021-10-20

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.35 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:A (auth: 0)
Chain Length:57
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7N4 Pfam ID:PF01783

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:B (auth: 1)
Chain Length:55
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7N9 Pfam ID:PF00471

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:C (auth: 2)
Chain Length:46
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7P5 Pfam ID:PF00468

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:D (auth: 3)
Chain Length:65
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7Q1 Pfam ID:PF01632

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:E (auth: 4)
Chain Length:38
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7Q6 Pfam ID:PF00444

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L10
Chain IDs:F (auth: 5)
Chain Length:165
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L31
Chain IDs:G (auth: 6)
Chain Length:70
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polyribonucleotide
Description:23S ribosomal RNA
Chain IDs:H (auth: A)
Chain Length:1542
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:I (auth: B)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:J (auth: C)
Chain Length:233
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P60422 Pfam ID:PF00181, PF03947

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:K (auth: D)
Chain Length:206
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P60438 Pfam ID:PF00297

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:L (auth: E)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P60723 Pfam ID:PF00573

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:M (auth: F)
Chain Length:135
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P62399 Pfam ID:PF00281, PF00673

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:N (auth: G)
Chain Length:177
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0AG55 Pfam ID:PF00347

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9
Chain IDs:O (auth: H)
Chain Length:149
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7R1 Pfam ID:PF01281, PF03948

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L11
Chain IDs:P (auth: I)
Chain Length:130
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7J7 Pfam ID:PF03946, PF00298

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:Q (auth: J)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0AA10 Pfam ID:PF00572

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:R (auth: K)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0ADY3 Pfam ID:PF00238

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:S (auth: L)
Chain Length:124
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P02413 Pfam ID:PF00828

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:T (auth: M)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0ADY7 Pfam ID:PF00252

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:U (auth: N)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0AG44 Pfam ID:PF01196

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:V (auth: O)
Chain Length:89
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0C018 Pfam ID:PF00861

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:W (auth: P)
Chain Length:82
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7K6 Pfam ID:PF01245

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:X (auth: Q)
Chain Length:84
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7L3 Pfam ID:PF00453

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:Y (auth: R)
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0AG48 Pfam ID:PF00829

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:Z (auth: S)
Chain Length:110
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P61175 Pfam ID:PF00237

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:AA (auth: T)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0ADZ0 Pfam ID:PF00276

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:BA (auth: U)
Chain Length:71
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P60624 Pfam ID:PF00467, PF17136

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:CA (auth: V)
Chain Length:94
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P68919 Pfam ID:PF01386

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:DA (auth: W)
Chain Length:85
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7L8 Pfam ID:PF01016

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:EA (auth: X)
Chain Length:78
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7M2 Pfam ID:PF00830

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:FA (auth: Y)
Chain Length:2
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0A7M6 Pfam ID:PF00831

Protein Blast

Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:GA (auth: Z)
Chain Length:59
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P0AG51 Pfam ID:PF00327

Polymer Type:polyribonucleotide
Description:16S ribosomal RNA
Chain IDs:HA (auth: a)
Chain Length:1542
Number of Molecules:1
Biological Source:Escherichia coli

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S2
Chain IDs:IA (auth: b)
Chain Length:120
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3TPN2 Pfam ID:PF00318

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S3
Chain IDs:JA (auth: c)
Chain Length:233
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SQX2 Pfam ID:PF07650, PF00189

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:KA (auth: d)
Chain Length:206
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SR62 Pfam ID:PF00163, PF01479

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:LA (auth: e)
Chain Length:201
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SR27 Pfam ID:PF00333, PF03719

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6
Chain IDs:MA (auth: f)
Chain Length:135
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P02358 Pfam ID:PF01250

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S7
Chain IDs:NA (auth: g)
Chain Length:177
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:P02359 Pfam ID:PF00177

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:OA (auth: h)
Chain Length:149
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SR12 Pfam ID:PF00410

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S9
Chain IDs:PA (auth: i)
Chain Length:130
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SRY2 Pfam ID:PF00380

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S10
Chain IDs:QA (auth: j)
Chain Length:103
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SQT7 Pfam ID:PF00338

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:RA (auth: k)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SR57 Pfam ID:PF00411

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:SA (auth: l)
Chain Length:124
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SQR7 Pfam ID:PF00164

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S13
Chain IDs:TA (auth: m)
Chain Length:136
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SR52 Pfam ID:PF00416

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S14
Chain IDs:UA (auth: n)
Chain Length:102
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SR07 Pfam ID:PF00253

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:VA (auth: o)
Chain Length:89
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SSQ7 Pfam ID:PF00312

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:WA (auth: p)
Chain Length:82
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SYP2 Pfam ID:PF00886

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:XA (auth: q)
Chain Length:84
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SQY7 Pfam ID:PF00366

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:YA (auth: r)
Chain Length:75
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SFP7 Pfam ID:PF01084

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S19
Chain IDs:ZA (auth: s)
Chain Length:110
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3SQW2 Pfam ID:PF00203

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:AB (auth: t)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3TRH7 Pfam ID:PF01649

Protein Blast

Polymer Type:polypeptide(L)
Description:30S ribosomal protein S21
Chain IDs:BB (auth: u)
Chain Length:71
Number of Molecules:1
Biological Source:Escherichia coli

UniProt ID:C3STZ7 Pfam ID:PF01165

Polymer Type:polyribonucleotide
Description:P-site tRNA(fMet)
Chain IDs:CB (auth: v)
Chain Length:94
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polyribonucleotide
Description:P-site fMet-Phe-tRNA(Phe)
Chain IDs:DB (auth: w)
Chain Length:85
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polypeptide(L)
Description:Dipeptide (FME-PHE)
Chain IDs:EB (auth: y)
Chain Length:2
Number of Molecules:1
Biological Source:Escherichia coli

Polymer Type:polyribonucleotide
Description:mRNA
Chain IDs:FB (auth: z)
Chain Length:59
Number of Molecules:1
Biological Source:Escherichia coli

Modified Residue