7PJK image
Deposition Date 2021-08-24
Release Date 2022-03-16
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7PJK
Title:
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with a benzotriazole analog of thalidomide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cereblon isoform 4
Gene (Uniprot):MGR_0879
Chain IDs:A, B, C
Chain Length:125
Number of Molecules:3
Biological Source:Magnetospirillum gryphiswaldense MSR-1
Primary Citation
Replacing the phthalimide core in thalidomide with benzotriazole.
J Enzyme Inhib Med Chem 37 527 530 (2022)
PMID: 35220840 DOI: 10.1080/14756366.2021.2024525

Abstact

The advent of proteolysis-targeting chimaeras (PROTACs) mandates that new ligands for the recruitment of E3 ligases are discovered. The traditional immunomodulatory drugs (IMiDs) such as thalidomide and its analogues (all based on the phthalimide glutarimide core) bind to Cereblon, the substrate receptor of the CRL4ACRBN E3 ligase. We designed a thalidomide analogue in which the phthalimide moiety was replaced with benzotriazole, using an innovative synthesis strategy. Compared to thalidomide, the resulting "benzotriazolo thalidomide" has a similar binding mode, but improved properties, as revealed in crystallographic analyses, affinity assays and cell culture.

Legend

Protein

Chemical

Disease

Primary Citation of related structures