7PIW image
Entry Detail
PDB ID:
7PIW
EMDB ID:
Keywords:
Title:
Stacked stretched Dunaliella PSII
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-08-23
Release Date:
2022-08-17
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Photosystem II protein D1
Chain IDs:A, Z (auth: a), YA (auth: A1), XB (auth: a1)
Chain Length:336
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II CP47 reaction center protein
Chain IDs:B, AA (auth: b), ZA (auth: B1), YB (auth: b1)
Chain Length:484
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II CP43 reaction center protein
Chain IDs:D (auth: C), CA (auth: c), BB (auth: C1), AC (auth: c1)
Chain Length:449
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II D2 protein
Chain IDs:E (auth: D), DA (auth: d), CB (auth: D1), BC (auth: d1)
Chain Length:348
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Cytochrome b559 subunit alpha
Chain IDs:F (auth: E), EA (auth: e), DB (auth: E1), CC (auth: e1)
Chain Length:76
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Cytochrome b559 subunit beta
Chain IDs:G (auth: F), FA (auth: f), EB (auth: F1), DC (auth: f1)
Chain Length:31
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:LHCII M2
Chain IDs:U (auth: G), TA (auth: g), SB (auth: G1), QC (auth: g1)
Chain Length:221
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein H
Chain IDs:H, GA (auth: h), FB (auth: H1), EC (auth: h1)
Chain Length:67
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein I
Chain IDs:I, HA (auth: i), GB (auth: I1), FC (auth: i1)
Chain Length:35
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein J
Chain IDs:J, IA (auth: j), HB (auth: J1), GC (auth: j1)
Chain Length:36
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein K
Chain IDs:K, JA (auth: k), IB (auth: K1), HC (auth: k1)
Chain Length:37
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein L
Chain IDs:L, KA (auth: l), JB (auth: L1)
Chain Length:38
Number of Molecules:3
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein M
Chain IDs:M, LA (auth: m)
Chain Length:32
Number of Molecules:2
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein M
Chain IDs:KB (auth: M1), IC (auth: m1)
Chain Length:31
Number of Molecules:2
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:LHCII M3
Chain IDs:T (auth: N), SA (auth: n), RB (auth: N1), PC (auth: n1)
Chain Length:222
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:PsbO
Chain IDs:N (auth: O), MA (auth: o), LB (auth: O1), JC (auth: o1)
Chain Length:238
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:PsbP
Chain IDs:O (auth: P), NA (auth: p), MB (auth: P1), KC (auth: p1)
Chain Length:187
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:CP29
Chain IDs:V (auth: R), UA (auth: r)
Chain Length:202
Number of Molecules:2
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:CP29
Chain IDs:TB (auth: R1), RC (auth: r1)
Chain Length:202
Number of Molecules:2
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:CP26
Chain IDs:W (auth: S), VA (auth: s), UB (auth: S1), SC (auth: s1)
Chain Length:243
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein T
Chain IDs:P (auth: T), OA (auth: t), NB (auth: T1), LC (auth: t1)
Chain Length:30
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:PsbU
Chain IDs:Y (auth: U), XA (auth: u), WB (auth: U1), UC (auth: u1)
Chain Length:27
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein Ycf12
Chain IDs:C (auth: V), BA (auth: v), AB (auth: V1), ZB (auth: v1)
Chain Length:32
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:PsbW
Chain IDs:Q (auth: W), PA (auth: w), OB (auth: W1), MC (auth: w1)
Chain Length:44
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:PsbX
Chain IDs:R (auth: X), QA (auth: x), PB (auth: X1), NC (auth: x1)
Chain Length:30
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:LHCII M1
Chain IDs:X (auth: Y), WA (auth: y), VB (auth: Y1), TC (auth: y1)
Chain Length:222
Number of Molecules:4
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Description:PsbZ
Chain IDs:S (auth: Z), RA (auth: z), QB (auth: Z1), OC (auth: z1)
Chain Length:61
Number of Molecules:4
Biological Source:Dunaliella salina
Primary Citation
Structure of Dunaliella Photosystem II reveals conformational flexibility of stacked and unstacked supercomplexes.
Elife 12 ? ? (2023)
PMID: 36799903 DOI: 10.7554/eLife.81150

Abstact

Photosystem II (PSII) generates an oxidant whose redox potential is high enough to enable water oxidation , a substrate so abundant that it assures a practically unlimited electron source for life on earth . Our knowledge on the mechanism of water photooxidation was greatly advanced by high-resolution structures of prokaryotic PSII . Here, we show high-resolution cryogenic electron microscopy (cryo-EM) structures of eukaryotic PSII from the green alga Dunaliella salina at two distinct conformations. The conformers are also present in stacked PSII, exhibiting flexibility that may be relevant to the grana formation in chloroplasts of the green lineage. CP29, one of PSII associated light-harvesting antennae, plays a major role in distinguishing the two conformations of the supercomplex. We also show that the stacked PSII dimer, a form suggested to support the organisation of thylakoid membranes , can appear in many different orientations providing a flexible stacking mechanism for the arrangement of grana stacks in thylakoids. Our findings provide a structural basis for the heterogenous nature of the eukaryotic PSII on multiple levels.

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