7PI0 image
Deposition Date 2021-08-19
Release Date 2022-08-17
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7PI0
Keywords:
Title:
Unstacked compact Dunaliella PSII
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.43 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:A, Z (auth: a)
Chain Length:336
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:B, AA (auth: b)
Chain Length:484
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:D (auth: C), CA (auth: c)
Chain Length:449
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:E (auth: D), DA (auth: d)
Chain Length:348
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:F (auth: E), EA (auth: e)
Chain Length:76
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Chain IDs:G (auth: F), FA (auth: f)
Chain Length:31
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein of LHCII type 2, chloroplastic
Chain IDs:U (auth: G), TA (auth: g)
Chain Length:221
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:H, GA (auth: h)
Chain Length:67
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:I, HA (auth: i)
Chain Length:35
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Chain IDs:J, IA (auth: j)
Chain Length:36
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:K, JA (auth: k)
Chain Length:37
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:L, KA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Chain IDs:M, LA (auth: m)
Chain Length:31
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein of LHCII type 3, chloroplastic
Chain IDs:T (auth: N), SA (auth: n)
Chain Length:222
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 1, chloroplastic
Chain IDs:N (auth: O), MA (auth: o)
Chain Length:238
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 2, chloroplastic
Chain IDs:O (auth: P), NA (auth: p)
Chain Length:187
Number of Molecules:2
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic, CP29
Chain IDs:V (auth: R), UA (auth: r)
Chain Length:196
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic, CP26
Chain IDs:W (auth: S), VA (auth: s)
Chain Length:243
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:P (auth: T), OA (auth: t)
Chain Length:30
Number of Molecules:2
Biological Source:Dunaliella salina
Polymer Type:polypeptide(L)
Molecule:Photosystem II extrinsic protein U
Chain IDs:Y (auth: U), XA (auth: u)
Chain Length:27
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Ycf12
Gene (Uniprot):ycf12
Chain IDs:C (auth: V), BA (auth: v)
Chain Length:32
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PSII 6.1 kDa protein
Chain IDs:Q (auth: W), PA (auth: w)
Chain Length:44
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hypothetical protein
Chain IDs:R (auth: X), QA (auth: x)
Chain Length:30
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein of LHCII type 1, chloroplastic
Chain IDs:X (auth: Y), WA (auth: y)
Chain Length:222
Number of Molecules:2
Biological Source:Dunaliella salina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:S (auth: Z), RA (auth: z)
Chain Length:61
Number of Molecules:2
Biological Source:Dunaliella salina
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSD B CYS modified residue
Primary Citation
Structure of Dunaliella Photosystem II reveals conformational flexibility of stacked and unstacked supercomplexes.
Elife 12 ? ? (2023)
PMID: 36799903 DOI: 10.7554/eLife.81150

Abstact

Photosystem II (PSII) generates an oxidant whose redox potential is high enough to enable water oxidation , a substrate so abundant that it assures a practically unlimited electron source for life on earth . Our knowledge on the mechanism of water photooxidation was greatly advanced by high-resolution structures of prokaryotic PSII . Here, we show high-resolution cryogenic electron microscopy (cryo-EM) structures of eukaryotic PSII from the green alga Dunaliella salina at two distinct conformations. The conformers are also present in stacked PSII, exhibiting flexibility that may be relevant to the grana formation in chloroplasts of the green lineage. CP29, one of PSII associated light-harvesting antennae, plays a major role in distinguishing the two conformations of the supercomplex. We also show that the stacked PSII dimer, a form suggested to support the organisation of thylakoid membranes , can appear in many different orientations providing a flexible stacking mechanism for the arrangement of grana stacks in thylakoids. Our findings provide a structural basis for the heterogenous nature of the eukaryotic PSII on multiple levels.

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Primary Citation of related structures