7PHR image
Deposition Date 2021-08-18
Release Date 2022-08-31
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7PHR
Keywords:
Title:
Structure of a fully assembled T-cell receptor engaging a tumor-associated peptide-MHC I
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Aequorea victoria (Taxon ID: 6100)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.08 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T-cell receptor alpha chain
Chain IDs:A
Chain Length:251
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell receptor beta chain
Chain IDs:B
Chain Length:290
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 gamma chain
Gene (Uniprot):CD3G
Chain IDs:C
Chain Length:122
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 delta chain, green fluorescent protein
Gene (Uniprot):CD3D, GFP
Chain IDs:D
Chain Length:356
Number of Molecules:1
Biological Source:Homo sapiens, Aequorea victoria
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 epsilon chain
Gene (Uniprot):CD3E
Chain IDs:E, J (auth: e)
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A alpha chain
Gene (Uniprot):HLA-A
Chain IDs:F (auth: H)
Chain Length:304
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:G (auth: L)
Chain Length:101
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Tumor-associated antigentic peptide gp100
Gene (Uniprot):PMEL
Mutations:A9V
Chain IDs:H (auth: P)
Chain Length:9
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 zeta chain
Gene (Uniprot):CD247
Chain IDs:I (auth: Z), K (auth: z)
Chain Length:36
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of a fully assembled tumor-specific T cell receptor ligated by pMHC.
Cell 185 3201 3213.e19 (2022)
PMID: 35985289 DOI: 10.1016/j.cell.2022.07.010

Abstact

The T cell receptor (TCR) expressed by T lymphocytes initiates protective immune responses to pathogens and tumors. To explore the structural basis of how TCR signaling is initiated when the receptor binds to peptide-loaded major histocompatibility complex (pMHC) molecules, we used cryogenic electron microscopy to determine the structure of a tumor-reactive TCRαβ/CD3δγε2ζ2 complex bound to a melanoma-specific human class I pMHC at 3.08 Å resolution. The antigen-bound complex comprises 11 subunits stabilized by multivalent interactions across three structural layers, with clustered membrane-proximal cystines stabilizing the CD3-εδ and CD3-εγ heterodimers. Extra density sandwiched between transmembrane helices reveals the involvement of sterol lipids in TCR assembly. The geometry of the pMHC/TCR complex suggests that efficient TCR scanning of pMHC requires accurate pre-positioning of T cell and antigen-presenting cell membranes. Comparisons of the ligand-bound and unliganded receptors, along with molecular dynamics simulations, indicate that TCRs can be triggered in the absence of spontaneous structural rearrangements.

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Primary Citation of related structures