7PGJ image
Entry Detail
PDB ID:
7PGJ
Title:
Chimeric carminomycin-4-O-methyltransferase (DnrK) with regions from 10-decarboxylate TamK and 10-hydroxylase RdmB, together with a single point mutation F297G
Biological Source:
PDB Version:
Deposition Date:
2021-08-14
Release Date:
2022-08-24
Method Details:
Experimental Method:
Resolution:
2.13 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Carminomycin 4-O-methyltransferase DnrK,Methyltransferase domain-containing protein,Aclacinomycin 10-hydroxylase RdmB
Chain IDs:A
Chain Length:368
Number of Molecules:1
Biological Source:Streptomyces peucetius, Streptomyces tsukubensis (strain DSM 42081 / NBRC 108919 / NRRL 18488 / 9993), Streptomyces purpurascens
Primary Citation
Evolution-inspired engineering of anthracycline methyltransferases.
Pnas Nexus 2 pgad009 pgad009 (2023)
PMID: 36874276 DOI: 10.1093/pnasnexus/pgad009

Abstact

Streptomyces soil bacteria produce hundreds of anthracycline anticancer agents with a relatively conserved set of genes. This diversity depends on the rapid evolution of biosynthetic enzymes to acquire novel functionalities. Previous work has identified S-adenosyl-l-methionine-dependent methyltransferase-like proteins that catalyze 4-O-methylation, 10-decarboxylation, or 10-hydroxylation, with additional differences in substrate specificities. Here we focused on four protein regions to generate chimeric enzymes using sequences from four distinct subfamilies to elucidate their influence in catalysis. Combined with structural studies we managed to depict factors that influence gain-of-hydroxylation, loss-of-methylation, and substrate selection. The engineering expanded the catalytic repertoire to include novel 9,10-elimination activity, and 4-O-methylation and 10-decarboxylation of unnatural substrates. The work provides an instructive account on how the rise of diversity of microbial natural products may occur through subtle changes in biosynthetic enzymes.

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