7PE1 image
Entry Detail
PDB ID:
7PE1
EMDB ID:
Title:
Cryo-EM structure of BMV-derived VLP expressed in E. coli and assembled in the presence of tRNA (tVLP)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-08-09
Release Date:
2022-03-02
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Coat protein
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U (auth: V), V (auth: W), W (auth: X), X (auth: Y), Y (auth: Z), Z (auth: AA), AA (auth: BA), BA (auth: CA), CA (auth: DA), DA (auth: EA), EA (auth: FA), FA (auth: GA), GA (auth: HA), HA (auth: IA), IA (auth: JA), JA (auth: KA), KA (auth: LA), LA (auth: MA), MA (auth: NA), NA (auth: OA), OA (auth: PA), PA (auth: QA), QA (auth: RA), RA (auth: SA), SA (auth: TA), TA (auth: UA), UA (auth: VA), VA (auth: WA), WA (auth: XA), XA (auth: YA), YA (auth: ZA), ZA (auth: AB), AB (auth: BB), BB (auth: CB), CB (auth: DB), DB (auth: EB), EB (auth: FB), FB (auth: GB), GB (auth: HB), HB (auth: IB), IB (auth: JB), JB (auth: KB), KB (auth: LB), LB (auth: MB), MB (auth: NB), NB (auth: OB), OB (auth: PB), PB (auth: QB), QB (auth: RB), RB (auth: SB), SB (auth: TB), TB (auth: UB), UB (auth: VB), VB (auth: WB), WB (auth: XB), XB (auth: YB), YB (auth: ZB), ZB (auth: AC), AC (auth: BC), BC (auth: CC), CC (auth: DC), DC (auth: EC), EC (auth: FC), FC (auth: GC), GC (auth: HC), HC (auth: IC), IC (auth: JC), JC (auth: KC), KC (auth: LC), LC (auth: MC), MC (auth: NC), NC (auth: OC), OC (auth: PC), PC (auth: QC), QC (auth: RC), RC (auth: SC), SC (auth: TC), TC (auth: UC), UC (auth: VC), VC (auth: WC), WC (auth: XC), XC (auth: YC), YC (auth: ZC), ZC (auth: AD), AD (auth: BD), BD (auth: CD), CD (auth: DD), DD (auth: ED), ED (auth: FD), FD (auth: GD), GD (auth: HD), HD (auth: ID), ID (auth: JD), JD (auth: KD), KD (auth: LD), LD (auth: MD), MD (auth: ND), ND (auth: OD), OD (auth: PD), PD (auth: QD), QD (auth: RD), RD (auth: SD), SD (auth: TD), TD (auth: UD), UD (auth: VD), VD (auth: WD), WD (auth: XD), XD (auth: YD), YD (auth: ZD), ZD (auth: AE), AE (auth: BE), BE (auth: CE), CE (auth: DE), DE (auth: EE), EE (auth: FE), FE (auth: GE), GE (auth: HE), HE (auth: IE), IE (auth: JE), JE (auth: KE), KE (auth: LE), LE (auth: ME), ME (auth: NE), NE (auth: OE), OE (auth: PE), PE (auth: QE), QE (auth: RE), RE (auth: SE), SE (auth: TE), TE (auth: UE), UE (auth: VE), VE (auth: WE), WE (auth: XE), XE (auth: YE), YE (auth: ZE), ZE (auth: AF), AF (auth: BF), BF (auth: CF), CF (auth: DF), DF (auth: EF), EF (auth: FF), FF (auth: GF), GF (auth: HF), HF (auth: IF), IF (auth: JF), JF (auth: KF), KF (auth: LF), LF (auth: MF), MF (auth: NF), NF (auth: OF), OF (auth: PF), PF (auth: QF), QF (auth: RF), RF (auth: SF), SF (auth: TF), TF (auth: UF), UF (auth: VF), VF (auth: WF), WF (auth: XF), XF (auth: YF)
Chain Length:192
Number of Molecules:180
Biological Source:Brome mosaic virus
Primary Citation
Cryo-EM reconstructions of BMV-derived virus-like particles reveal assembly defects in the icosahedral lattice structure.
Nanoscale 14 3224 3233 (2022)
PMID: 35156989 DOI: 10.1039/d1nr05650f

Abstact

The increasing interest in virus-like particles (VLPs) has been reflected by the growing number of studies on their assembly and application. However, the formation of complete VLPs is a complex phenomenon, making it difficult to rationally design VLPs with desired features de novo. In this paper, we describe VLPs assembled in vitro from the recombinant capsid protein of brome mosaic virus (BMV). The analysis of VLPs was performed by Cryo-EM reconstructions and allowed us to visualize a few classes of VLPs, giving insight into the VLP self-assembly process. Apart from the mature icosahedral VLP practically identical with native virions, we describe putative VLP intermediates displaying non-icosahedral arrangements of capsomers, proposed to occur before the final disorder-order transition stage of icosahedral VLP assembly. Some of the described VLP classes show a lack of protein shell continuity, possibly resulting from too strong interaction with the cargo (in this case tRNA) with the capsid protein. We believe that our results are a useful prerequisite for the rational design of VLPs in the future and lead the way to the effective production of modified VLPs.

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