ISDA

Deposition Date 2021-07-21

Release Date 2021-10-20

Last Version Date 2024-01-31

Entry Detail

PDB ID:

7P88

Keywords:

RNA BINDING PROTEIN

Title:

Crystal structure of YTHDC1 with compound YLI_DC1_002

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.50 Å

R-Value Free:

0.22

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:YTH domain-containing protein 1
Gene (Uniprot):YTHDC1
Chain IDs:A, B
Chain Length:183
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q96MU7 Pfam ID:PF04146

Ligand Molecules

OYN

SO4

Primary Citation

Structure-based design of ligands of the m6A-RNA reader YTHDC1

Li, Y, Bedi, R.K, Nai, F, von Roten, V, Dolbois, A, Zalesak, F, Nachawati, R, Huang, D, Caflisch, A.Show

Eur J Med Chem Rep 5 100057 ? (2022)

DOI: 10.1016/j.ejmcr.2022.100057

Primary Citation of related structures