7P46 image
Entry Detail
PDB ID:
7P46
Keywords:
Title:
Crystal Structure of Xanthomonas campestris Tryptophan 2,3-dioxygenase (TDO)
Biological Source:
PDB Version:
Deposition Date:
2021-07-09
Release Date:
2021-10-06
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tryptophan 2,3-dioxygenase
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:282
Number of Molecules:8
Biological Source:Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Primary Citation
Binding of l-kynurenine to X. campestris tryptophan 2,3-dioxygenase.
J.Inorg.Biochem. 225 111604 111604 (2021)
PMID: 34571402 DOI: 10.1016/j.jinorgbio.2021.111604

Abstact

The kynurenine pathway is the major route of tryptophan metabolism. The first step of this pathway is catalysed by one of two heme-dependent dioxygenase enzymes - tryptophan 2,3-dioxygenase (TDO) and indoleamine 2,3-dioxygenase (IDO) - leading initially to the formation of N-formylkynurenine (NFK). In this paper, we present a crystal structure of a bacterial TDO from X. campestris in complex with l-kynurenine, the hydrolysed product of NFK. l-kynurenine is bound at the active site in a similar location to the substrate (l-Trp). Hydrogen bonding interactions with Arg117 and the heme 7-propionate anchor the l-kynurenine molecule into the pocket. A mechanism for the hydrolysis of NFK in the active site is presented.

Legend

Protein

Chemical

Disease

Primary Citation of related structures