7OY8 image
Deposition Date 2021-06-23
Release Date 2021-09-22
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7OY8
Title:
Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Light-harvesting protein B-870 beta chain
Gene (Uniprot):Rru_A2977
Chain IDs:A (auth: 1), C (auth: 3), E (auth: 5), G (auth: 7), I (auth: 9), P (auth: I), R (auth: K), V (auth: O), W (auth: Q), Y (auth: S), AA (auth: U), CA (auth: W), EA (auth: Y), GA (auth: d), HA (auth: m), IA (auth: n)
Chain Length:54
Number of Molecules:16
Biological Source:Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
Polymer Type:polypeptide(L)
Molecule:Antenna complex, alpha/beta subunit
Gene (Uniprot):Rru_A2976
Chain IDs:B (auth: 2), D (auth: 4), F (auth: 6), H (auth: 8), J (auth: A), K (auth: D), L (auth: E), M (auth: F), N (auth: G), Q (auth: J), U (auth: N), Z (auth: T), BA (auth: V), DA (auth: X), FA (auth: Z)
Chain Length:50
Number of Molecules:15
Biological Source:Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center, H-chain
Gene (Uniprot):Rru_A0617
Chain IDs:O (auth: H)
Chain Length:257
Number of Molecules:1
Biological Source:Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center L subunit
Gene (Uniprot):Rru_A2975
Chain IDs:S (auth: L)
Chain Length:276
Number of Molecules:1
Biological Source:Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Gene (Uniprot):Rru_A2974
Chain IDs:T (auth: M)
Chain Length:54
Number of Molecules:1
Biological Source:Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
Polymer Type:polypeptide(L)
Molecule:Antenna complex, alpha/beta subunit
Gene (Uniprot):Rru_A2976
Chain IDs:X (auth: R)
Chain Length:62
Number of Molecules:1
Biological Source:Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME B MET modified residue
Primary Citation
Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex at 2.5 angstrom.
Biochem.J. 478 3253 3263 (2021)
PMID: 34402504 DOI: 10.1042/BCJ20210511

Abstact

The reaction centre light-harvesting 1 (RC-LH1) complex is the core functional component of bacterial photosynthesis. We determined the cryo-electron microscopy (cryo-EM) structure of the RC-LH1 complex from Rhodospirillum rubrum at 2.5 Å resolution, which reveals a unique monomeric bacteriochlorophyll with a phospholipid ligand in the gap between the RC and LH1 complexes. The LH1 complex comprises a circular array of 16 αβ-polypeptide subunits that completely surrounds the RC, with a preferential binding site for a quinone, designated QP, on the inner face of the encircling LH1 complex. Quinols, initially generated at the RC QB site, are proposed to transiently occupy the QP site prior to traversing the LH1 barrier and diffusing to the cytochrome bc1 complex. Thus, the QP site, which is analogous to other such sites in recent cryo-EM structures of RC-LH1 complexes, likely reflects a general mechanism for exporting quinols from the RC-LH1 complex.

Legend

Protein

Chemical

Disease

Primary Citation of related structures