7ORA image
Entry Detail
PDB ID:
7ORA
Keywords:
Title:
Crystal structure of the T478K mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-45 and COVOX-253 Fabs
Biological Source:
PDB Version:
Deposition Date:
2021-06-04
Release Date:
2021-07-07
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:COVOX-45 Fab heavy chain
Chain IDs:B (auth: A), G (auth: D)
Chain Length:226
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:COVOX-45 Fab light chain
Chain IDs:C (auth: B), H (auth: E)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:COVOX-253 Fab heavy chain
Chain IDs:D (auth: F), I (auth: H)
Chain Length:228
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:COVOX-253 Fab light chain
Chain IDs:E (auth: G), J (auth: L)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Spike protein S1
Mutations:T478K
Chain IDs:A (auth: R), F (auth: C)
Chain Length:205
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
Primary Citation

Abstact

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has undergone progressive change, with variants conferring advantage rapidly becoming dominant lineages, e.g., B.1.617. With apparent increased transmissibility, variant B.1.617.2 has contributed to the current wave of infection ravaging the Indian subcontinent and has been designated a variant of concern in the United Kingdom. Here we study the ability of monoclonal antibodies and convalescent and vaccine sera to neutralize B.1.617.1 and B.1.617.2, complement this with structural analyses of Fab/receptor binding domain (RBD) complexes, and map the antigenic space of current variants. Neutralization of both viruses is reduced compared with ancestral Wuhan-related strains, but there is no evidence of widespread antibody escape as seen with B.1.351. However, B.1.351 and P.1 sera showed markedly more reduction in neutralization of B.1.617.2, suggesting that individuals infected previously by these variants may be more susceptible to reinfection by B.1.617.2. This observation provides important new insights for immunization policy with future variant vaccines in non-immune populations.

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Primary Citation of related structures