7OQK image
Deposition Date 2021-06-03
Release Date 2022-04-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7OQK
Keywords:
LYASE
Title:
Human OMPD-domain of UMPS in complex with substrate OMP at 1.10 Angstroms resolution, 15 minutes soaking
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.10 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.13
Space Group:
P 1 21 1
7OQK validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uridine 5'-monophosphate synthase
Gene (Uniprot):UMPS
Chain IDs:A
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P11172 Pfam ID:PF00215 EC:4.1.1.23
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uridine 5'-monophosphate synthase
Gene (Uniprot):UMPS
Chain IDs:B
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P11172 Pfam ID:PF00215 EC:4.1.1.23
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ALY A LYS modified residue
CSS A CYS modified residue
Ligand Molecules
GOL
OMP
SO4
U
Primary Citation
Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis
Nat Catal 5 332 341 (2022)
DOI: 10.1038/s41929-022-00771-w
Primary Citation of related structures
7OQK