7OP9 image
Entry Detail
PDB ID:
7OP9
Keywords:
Title:
Purine nucleoside phosphorylase(DeoD-type) from H. pylori with 2,6-dichloropurine
Biological Source:
PDB Version:
Deposition Date:
2021-05-31
Release Date:
2022-05-04
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Purine nucleoside phosphorylase DeoD-type
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:233
Number of Molecules:12
Biological Source:Helicobacter pylori (strain ATCC 700392 / 26695)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OCS A CYS modified residue
Primary Citation
Interactions of 2,6-substituted purines with purine nucleoside phosphorylase from Helicobacter pylori in solution and in the crystal, and the effects of these compounds on cell cultures of this bacterium.
J Enzyme Inhib Med Chem 37 1083 1097 (2022)
PMID: 35437103 DOI: 10.1080/14756366.2022.2061965

Abstact

Helicobacter pylori represents a global health threat with around 50% of the world population infected. Due to the increasing number of antibiotic-resistant strains, new strategies for eradication of H. pylori are needed. In this study, we suggest purine nucleoside phosphorylase (PNP) as a possible new drug target, by characterising its interactions with 2- and/or 6-substituted purines as well as the effect of these compounds on bacterial growth. Inhibition constants are in the micromolar range, the lowest being that of 6-benzylthio-2-chloropurine. This compound also inhibits H. pylori 26695 growth at the lowest concentration. X-ray structures of the complexes of PNP with the investigated compounds allowed the identification of interactions of inhibitors in the enzyme's base-binding site and the suggestion of structures that could bind to the enzyme more tightly. Our findings prove the potential of PNP inhibitors in the design of drugs against H. pylori.

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Primary Citation of related structures