7OM4 image
Entry Detail
PDB ID:
7OM4
Keywords:
Title:
Nanobody EgB4 bound to the full extracellular EGFR-EGF complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-05-21
Release Date:
2022-03-02
Method Details:
Experimental Method:
Resolution:
6.05 Å
R-Value Free:
0.32
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Epidermal growth factor receptor
Chain IDs:A
Chain Length:630
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nanobody EgB4
Chain IDs:C (auth: B)
Chain Length:130
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Description:Epidermal growth factor
Chain IDs:B (auth: C)
Chain Length:53
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into the non-inhibitory mechanism of the anti-EGFR EgB4 nanobody.
Bmc Mol Cell Biol 23 12 12 (2022)
PMID: 35232398 DOI: 10.1186/s12860-022-00412-x

Abstact

BACKGROUND The epidermal growth factor receptor (EGFR) is involved in various developmental processes, and alterations of its extracellular segment are associated with several types of cancers, in particular glioblastoma multiforme (GBM). The EGFR extracellular region is therefore a primary target for therapeutic agents, such as monoclonal antibodies and variable domains of heavy chain antibodies (VHH), also called nanobodies. Nanobodies have been previously shown to bind to EGFR, and to inhibit ligand-mediated EGFR activation. RESULTS Here we present the X-ray crystal structures of the EgB4 nanobody, alone (to 1.48 Å resolution) and bound to the full extracellular EGFR-EGF complex in its active conformation (to 6.0 Å resolution). We show that EgB4 binds to a new epitope located on EGFR domains I and II, and we describe the molecular mechanism by which EgB4 plays a non-inhibitory role in EGFR signaling. CONCLUSION This work provides the structural basis for the application of EgB4 as a tool for research, for targeted therapy, or as a biomarker to locate EGFR-associated tumors, all without affecting EGFR activation.

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