ISDA

Deposition Date 2021-05-19

Release Date 2022-01-26

Last Version Date 2022-02-09

Entry Detail

PDB ID:

7OLD

Keywords:

RIBOSOME

Title:

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Biological Source:

Source Organism:

Chaetomium thermophilum var. thermophilum DSM 1495 (Taxon ID: 759272)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:26S rRNA
Chain IDs:A (auth: 1)
Chain Length:3337
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:B (auth: 2)
Chain Length:1796
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:C (auth: 3)
Chain Length:120
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:D (auth: 4)
Chain Length:156
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

Polymer Type:polyribonucleotide
Molecule:pe/E tRNA
Chain IDs:E (auth: 5)
Chain Length:75
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative guanine nucleotide-binding protein
Gene (Uniprot):CTHT_0047160
Chain IDs:F (auth: A)
Chain Length:316
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S9U0 Pfam ID:PF00400

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HABP4_PAI-RBP1 domain-containing protein
Gene (Uniprot):CTHT_0022330
Chain IDs:G (auth: B)
Chain Length:302
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S428 Pfam ID:PF09598, PF04774

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Elongation factor 2
Gene (Uniprot):CTHT_0033570
Chain IDs:H (auth: C)
Chain Length:845
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S5T7 Pfam ID:PF00009, PF03144, PF14492, PF03764, PF00679

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L2-like protein
Gene (Uniprot):CTHT_0023090
Chain IDs:I (auth: LA)
Chain Length:254
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S4P8 Pfam ID:PF00181, PF03947

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3-like protein
Gene (Uniprot):CTHT_0004490
Chain IDs:J (auth: LB)
Chain Length:65
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RXW1 Pfam ID:PF00297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4-like protein
Gene (Uniprot):CTHT_0061540
Chain IDs:K (auth: LC)
Chain Length:365
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SFC3 Pfam ID:PF00573, PF14374

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l5-like protein
Gene (Uniprot):HT_0063640
Chain IDs:L (auth: LD)
Chain Length:304
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SEG2 Pfam ID:PF17144, PF14204

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Gene (Uniprot):CTHT_0009640
Chain IDs:M (auth: LE)
Chain Length:200
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S0D6 Pfam ID:PF01159

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l7-like protein
Gene (Uniprot):CTHT_0071220
Chain IDs:N (auth: LF)
Chain Length:249
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SFL0 Pfam ID:PF08079, PF00327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):CTHT_0042550
Chain IDs:O (auth: LG)
Chain Length:119
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SAJ9 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l9-like protein
Gene (Uniprot):CTHT_0009740
Chain IDs:P (auth: LH)
Chain Length:229
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S0E5 Pfam ID:PF00347

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10-like protein
Gene (Uniprot):CTHT_0063830
Chain IDs:Q (auth: LI)
Chain Length:110
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SEI1 Pfam ID:PF00252

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein
Gene (Uniprot):HT_0072970
Chain IDs:R (auth: LJ)
Chain Length:95
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SHQ2 Pfam ID:PF00281, PF00673

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L12-like protein
Gene (Uniprot):CTHT_0066380
Chain IDs:S (auth: LK)
Chain Length:94
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SGH8 Pfam ID:PF03946, PF00298

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Gene (Uniprot):CTHT_0045000
Chain IDs:T (auth: LL)
Chain Length:51
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S992 Pfam ID:PF01294

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14-like protein
Gene (Uniprot):CTHT_0014490
Chain IDs:U (auth: LM)
Chain Length:142
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S1R0 Pfam ID:PF01929

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):CTHT_0002100
Chain IDs:V (auth: LN)
Chain Length:203
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RZ88 Pfam ID:PF00827

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L16-like protein
Gene (Uniprot):CTHT_0068840
Chain IDs:W (auth: LO)
Chain Length:204
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SH61 Pfam ID:PF00572

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l17-like protein
Gene (Uniprot):CTHT_0067970
Chain IDs:X (auth: LP)
Chain Length:92
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SGY1 Pfam ID:PF00237

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L18-like protein
Gene (Uniprot):CTHT_0045230
Chain IDs:Y (auth: LQ)
Chain Length:147
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S9B5 Pfam ID:PF17135

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):CTHT_0047080
Chain IDs:Z (auth: LR)
Chain Length:192
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S9T3 Pfam ID:PF01280

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L20
Gene (Uniprot):CTHT_0056900
Chain IDs:AA (auth: LS)
Chain Length:312
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SCE2 Pfam ID:PF01775

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l21-like protein
Gene (Uniprot):CTHT_0011760
Chain IDs:BA (auth: LT)
Chain Length:160
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S0Z3 Pfam ID:PF01157

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22-like protein
Gene (Uniprot):CTHT_0052850
Chain IDs:CA (auth: LU)
Chain Length:127
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SDS8 Pfam ID:PF01776

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l23-like protein
Gene (Uniprot):CTHT_0074440
Chain IDs:DA (auth: LV)
Chain Length:139
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SI44 Pfam ID:PF00238

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L24-like protein
Gene (Uniprot):CTHT_0014380
Chain IDs:EA (auth: LW)
Chain Length:205
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S1P9 Pfam ID:PF01246

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L25-like protein
Gene (Uniprot):CTHT_0023650
Chain IDs:FA (auth: LX)
Chain Length:156
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S507 Pfam ID:PF00276, PF03939

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L26-like protein
Gene (Uniprot):CTHT_0007360
Chain IDs:GA (auth: LY)
Chain Length:138
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RYN9 Pfam ID:PF00467, PF16906

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):CTHT_0002720
Chain IDs:HA (auth: LZ)
Chain Length:135
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RZE9 Pfam ID:PF01777

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28-like protein
Chain IDs:IA (auth: La)
Chain Length:254
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):CHGG_02990
Chain IDs:JA (auth: Lb)
Chain Length:65
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:Q2H9W4 Pfam ID:PF01779

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l30-like protein
Gene (Uniprot):CTHT_0063820
Chain IDs:KA (auth: Lc)
Chain Length:365
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SEI0 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein
Gene (Uniprot):CTHT_0059140
Chain IDs:LA (auth: Ld)
Chain Length:304
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SD68 Pfam ID:PF01198

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32-like protein
Gene (Uniprot):CTHT_0027000
Chain IDs:MA (auth: Le)
Chain Length:200
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S6V4 Pfam ID:PF01655

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein l33-like protein
Gene (Uniprot):CTHT_0057640
Chain IDs:NA (auth: Lf)
Chain Length:249
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SCL3 Pfam ID:PF01247

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein l34-like protein
Gene (Uniprot):CTHT_0071430
Chain IDs:OA (auth: Lg)
Chain Length:119
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SFN0 Pfam ID:PF01199

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycotransferase
Gene (Uniprot):CTHT_0009650
Chain IDs:PA (auth: Lh)
Chain Length:229
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S0D7 Pfam ID:PF00831

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):CTHT_0054170
Chain IDs:QA (auth: Li)
Chain Length:110
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SBN1 Pfam ID:PF01158

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):CTHT_0011850
Chain IDs:RA (auth: Lj)
Chain Length:95
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S101 Pfam ID:PF01907

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38-like protein
Gene (Uniprot):CTHT_0065470
Chain IDs:SA (auth: Lk)
Chain Length:94
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SG89 Pfam ID:PF01781

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eL39
Gene (Uniprot):CHGG_03042
Chain IDs:TA (auth: Ll)
Chain Length:51
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:Q2H9R2 Pfam ID:PF00832

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):CTHT_0029790
Chain IDs:UA (auth: Lm)
Chain Length:142
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S8G4 Pfam ID:PF00240, PF01020

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41-A
Gene (Uniprot):RPL41A
Chain IDs:VA (auth: Ln), ZA (auth: Lr)
Chain Length:203
Number of Molecules:2
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:P0CX86 Pfam ID:PF05162

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L44-like protein
Gene (Uniprot):CTHT_0055350
Chain IDs:WA (auth: Lo)
Chain Length:204
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SBZ6 Pfam ID:PF00935

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L43-like protein
Gene (Uniprot):CTHT_0026110
Chain IDs:XA (auth: Lp)
Chain Length:92
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S6B0 Pfam ID:PF01780

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative 60S ribosomal protein
Gene (Uniprot):CTHT_0070250
Chain IDs:YA (auth: Lq)
Chain Length:147
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SHJ6 Pfam ID:PF01778

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein P0
Gene (Uniprot):CTHT_0067070
Chain IDs:AB (auth: Ls)
Chain Length:312
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SGP3 Pfam ID:PF00466, PF17777, PF00428

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S0
Gene (Uniprot):RPS0
Chain IDs:BB (auth: SA)
Chain Length:285
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RYF9 Pfam ID:PF00318

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S1
Gene (Uniprot):RPS1
Chain IDs:CB (auth: SB)
Chain Length:255
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S7T8 Pfam ID:PF01015

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S2-like protein
Gene (Uniprot):CTHT_0047910
Chain IDs:DB (auth: SC)
Chain Length:263
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SAV4 Pfam ID:PF00333, PF03719

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3-like protein
Gene (Uniprot):CTHT_0026360
Chain IDs:EB (auth: SD)
Chain Length:254
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S6I7 Pfam ID:PF07650, PF00189

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):CTHT_0012920
Chain IDs:FB (auth: SE)
Chain Length:62
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S1A6 Pfam ID:PF08071, PF00900, PF00467, PF16121

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein s5-like protein
Gene (Uniprot):CTHT_0015350
Chain IDs:GB (auth: SF)
Chain Length:212
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S1Z0 Pfam ID:PF00177

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):CTHT_0005340
Chain IDs:HB (auth: SG)
Chain Length:239
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RY43 Pfam ID:PF01092

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):CTHT_0021240
Chain IDs:IB (auth: SH)
Chain Length:203
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S8C4 Pfam ID:PF01251

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):CTHT_0005360
Chain IDs:JB (auth: SI)
Chain Length:202
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RY45 Pfam ID:PF01201

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein s9-like protein
Gene (Uniprot):CTHT_0011770
Chain IDs:KB (auth: SJ)
Chain Length:190
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S0Z4 Pfam ID:PF00163, PF01479

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein s10-like protein
Gene (Uniprot):CTHT_0002610
Chain IDs:LB (auth: SK)
Chain Length:159
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RZD8 Pfam ID:PF03501

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S11-like protein
Gene (Uniprot):CTHT_0060290
Chain IDs:MB (auth: SL)
Chain Length:161
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SF00 Pfam ID:PF16205, PF00366

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S12
Gene (Uniprot):CTHT_0070080
Chain IDs:NB (auth: SM)
Chain Length:144
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SHH9 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13-like protein
Gene (Uniprot):CTHT_0003530
Chain IDs:OB (auth: SN)
Chain Length:151
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RZM9 Pfam ID:PF08069, PF00312

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S14-like protein
Gene (Uniprot):CTHT_0071230
Chain IDs:PB (auth: SO)
Chain Length:150
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SFL1 Pfam ID:PF00411

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein s15-like protein
Gene (Uniprot):CTHT_0009120
Chain IDs:QB (auth: SP)
Chain Length:153
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S084 Pfam ID:PF00203

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S16-like protein
Gene (Uniprot):CTHT_0054540
Chain IDs:RB (auth: SQ)
Chain Length:143
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SBR7 Pfam ID:PF00380

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17-like protein
Gene (Uniprot):CTHT_0037790
Chain IDs:SB (auth: SR)
Chain Length:143
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S871 Pfam ID:PF00833

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative ribosomal protein
Gene (Uniprot):CTHT_0026460
Chain IDs:TB (auth: SS)
Chain Length:156
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S6J7 Pfam ID:PF00416

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19-like protein
Gene (Uniprot):CTHT_0071200
Chain IDs:UB (auth: ST)
Chain Length:153
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SFK8 Pfam ID:PF01090

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S20-like protein
Gene (Uniprot):CTHT_0020000
Chain IDs:VB (auth: SU)
Chain Length:116
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S379 Pfam ID:PF00338

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21-like protein
Gene (Uniprot):CTHT_0074200
Chain IDs:WB (auth: SV)
Chain Length:98
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SI21 Pfam ID:PF01249

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S22-like protein
Gene (Uniprot):CTHT_0070090
Chain IDs:XB (auth: SW)
Chain Length:130
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0SHI0 Pfam ID:PF00410

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein s23-like protein
Gene (Uniprot):CTHT_0005070
Chain IDs:YB (auth: SX)
Chain Length:145
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0RY17 Pfam ID:PF00164

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):CTHT_0041970.2
Chain IDs:ZB (auth: SY)
Chain Length:136
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:P0CU28 Pfam ID:PF01282

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):CTHT_0015340
Chain IDs:AC (auth: SZ)
Chain Length:99
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S1Y9 Pfam ID:PF03297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):CTHT_0018830
Chain IDs:BC (auth: Sa)
Chain Length:285
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S2X4 Pfam ID:PF01283

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein s27-like protein
Gene (Uniprot):CTHT_0014630
Chain IDs:CC (auth: Sb)
Chain Length:255
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S1S4 Pfam ID:PF01667

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28-like protein
Gene (Uniprot):CTHT_0046470
Chain IDs:DC (auth: Sc)
Chain Length:263
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S9M9 Pfam ID:PF01200

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uS14
Gene (Uniprot):CHGG_02536
Chain IDs:EC (auth: Sd)
Chain Length:254
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:Q2HB68 Pfam ID:PF00253

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S30
Gene (Uniprot):CHGG_06490
Chain IDs:FC (auth: Se)
Chain Length:62
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:Q2H4C5 Pfam ID:PF04758

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27a-like protein
Gene (Uniprot):CTHT_0018840
Chain IDs:GC (auth: Sf)
Chain Length:212
Number of Molecules:1
Biological Source:Chaetomium thermophilum var. thermophilum DSM 1495

UniProt ID:G0S2X5 Pfam ID:PF00240, PF01599

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
DDE	H	HIS	modified residue

Ligand Molecules

GDP

Primary Citation

High-resolution structures of a thermophilic eukaryotic 80S ribosome reveal atomistic details of translocation.

Kisonaite, M, Wild, K, Lapouge, K, Ruppert, T, Sinning, I.Show

Nat Commun 13 476 476 (2022)

PMID: 35079002 DOI: 10.1038/s41467-022-27967-9

Abstact

Ribosomes are complex and highly conserved ribonucleoprotein assemblies catalyzing protein biosynthesis in every organism. Here we present high-resolution cryo-EM structures of the 80S ribosome from a thermophilic fungus in two rotational states, which due to increased 80S stability provide a number of mechanistic details of eukaryotic translation. We identify a universally conserved 'nested base-triple knot' in the 26S rRNA at the polypeptide tunnel exit with a bulged-out nucleotide that likely serves as an adaptable element for nascent chain containment and handover. We visualize the structure and dynamics of the ribosome protective factor Stm1 upon ribosomal 40S head swiveling. We describe the structural impact of a unique and essential m1acp3 Ψ 18S rRNA hyper-modification embracing the anticodon wobble-position for eukaryotic tRNA and mRNA translocation. We complete the eEF2-GTPase switch cycle describing the GDP-bound post-hydrolysis state. Taken together, our data and their integration into the structural landscape of 80S ribosomes furthers our understanding of protein biogenesis.

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Primary Citation of related structures