7OKS image
Entry Detail
PDB ID:
7OKS
Title:
X-ray structure of soluble EPCR in P212121 space group
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-05-18
Release Date:
2022-04-27
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Endothelial protein C receptor
Chain IDs:A, B, C, D
Chain Length:193
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Identification of a broad lipid repertoire associated to the endothelial cell protein C receptor (EPCR).
Sci Rep 12 15127 15127 (2022)
PMID: 36068249 DOI: 10.1038/s41598-022-18844-y

Abstact

Evidence is mounting that the nature of the lipid bound to the endothelial cell protein C receptor (EPCR) has an impact on its biological roles, as observed in anticoagulation and more recently, in autoimmune disease. Phosphatidylethanolamine and phosphatidylcholine species dominate the EPCR lipid cargo, yet, the extent of diversity in the EPCR-associated lipid repertoire is still unknown and remains to be uncovered. We undertook mass spectrometry analyses to decipher the EPCR lipidome, and identified species not yet described as EPCR ligands, such as phosphatidylinositols and phosphatidylserines. Remarkably, we found further, more structurally divergent lipids classes, represented by ceramides and sphingomyelins, both in less abundant quantities. In support of our mass spectrometry results and previous studies, high-resolution crystal structures of EPCR in three different space groups point to a prevalent diacyl phospholipid moiety in EPCR's pocket but a mobile and ambiguous lipid polar head group. In sum, these studies indicate that EPCR can associate with varied lipid classes, which might impact its properties in anticoagulation and the onset of autoimmune disease.

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Primary Citation of related structures