7OKN image
Deposition Date 2021-05-18
Release Date 2021-12-01
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7OKN
Title:
Structure of the outer-membrane core complex (inner ring) from a conjugative type IV secretion system
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.34 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TraB
Chain IDs:A, C, E, G, I, K, M, O, Q, S, U, W, Y, AA (auth: a), CA (auth: c), EA (auth: e), GA (auth: g)
Chain Length:461
Number of Molecules:17
Biological Source:Salmonella enterica
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Type IV conjugative transfer system lipoprotein TraV
Chain IDs:B, D, F, H, J, L, N, P, R, T, V, X, Z, BA (auth: b), DA (auth: d), FA (auth: f), HA (auth: h)
Chain Length:204
Number of Molecules:17
Biological Source:Salmonella enterica
Ligand Molecules
Primary Citation
Architecture of the outer-membrane core complex from a conjugative type IV secretion system.
Nat Commun 12 6834 6834 (2021)
PMID: 34824240 DOI: 10.1038/s41467-021-27178-8

Abstact

Conjugation is one of the most important processes that bacteria utilize to spread antibiotic resistance genes among bacterial populations. Interbacterial DNA transfer requires a large double membrane-spanning nanomachine called the type 4 secretion system (T4SS) made up of the inner-membrane complex (IMC), the outer-membrane core complex (OMCC) and the conjugative pilus. The iconic F plasmid-encoded T4SS has been central in understanding conjugation for several decades, however atomic details of its structure are not known. Here, we report the structure of a complete conjugative OMCC encoded by the pED208 plasmid from E. coli, solved by cryo-electron microscopy at 3.3 Å resolution. This 2.1 MDa complex has a unique arrangement with two radial concentric rings, each having a different symmetry eventually contributing to remarkable differences in protein stoichiometry and flexibility in comparison to other OMCCs. Our structure suggests that F-OMCC is a highly dynamic complex, with implications for pilus extension and retraction during conjugation.

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Primary Citation of related structures