7ODA image
Deposition Date 2021-04-29
Release Date 2021-09-08
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7ODA
Keywords:
Title:
OXA-48-like Beta-lactamase OXA-436
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase
Gene (Uniprot):blaOXA-436
Chain IDs:A, B, C, D
Chain Length:244
Number of Molecules:4
Biological Source:Enterobacter asburiae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX A LYS modified residue
Primary Citation
Biochemical and biophysical characterization of the OXA-48-like carbapenemase OXA-436.
Acta Crystallogr.,Sect.F 77 312 318 (2021)
PMID: 34473108 DOI: 10.1107/S2053230X21008645

Abstact

The crystal structure of the class D β-lactamase OXA-436 was solved to a resolution of 1.80 Å. Higher catalytic rates were found at higher temperatures for the clinically important antibiotic imipenem, indicating better adaptation of OXA-436 to its mesophilic host than OXA-48, which is believed to originate from an environmental source. Furthermore, based on the most populated conformations during 100 ns molecular-dynamics simulations, it is postulated that the modulation of activity involves conformational shifts of the α3-α4 and β5-β6 loops. While these changes overall do not cause clinically significant shifts in the resistance profile, they show that antibiotic-resistance enzymes exist in a continuum. It is believed that these seemingly neutral differences in the sequence exist on a path leading to significant changes in substrate selectivity.

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Primary Citation of related structures