7OAE image
Entry Detail
PDB ID:
7OAE
EMDB ID:
Title:
Cryo-EM structure of the plectasin fibril (double strands)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-04-19
Release Date:
2022-04-27
Method Details:
Experimental Method:
Resolution:
2.00 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fungal defensin plectasin
Chain IDs:A (auth: B), B (auth: C), C (auth: D), D (auth: E), E (auth: F), F (auth: G), G (auth: H), H (auth: I), I (auth: J), J (auth: K), K (auth: L), L (auth: M), M (auth: N), N (auth: T), O (auth: U), P (auth: A), Q (auth: O), R (auth: P), S (auth: Q), T (auth: R), U (auth: S), V, W, X, Y, Z, AA (auth: 0), BA (auth: 1), CA (auth: 2), DA (auth: 3), EA (auth: 4), FA (auth: 5), GA (auth: 6), HA (auth: 7), IA (auth: 8), JA (auth: 9), KA (auth: a), LA (auth: b), MA (auth: c), NA (auth: d), OA (auth: e), PA (auth: f)
Chain Length:40
Number of Molecules:42
Biological Source:Pseudoplectania nigrella
Ligand Molecules
Primary Citation
pH- and concentration-dependent supramolecular assembly of a fungal defensin plectasin variant into helical non-amyloid fibrils.
Nat Commun 13 3162 3162 (2022)
PMID: 35672293 DOI: 10.1038/s41467-022-30462-w

Abstact

Self-assembly and fibril formation play important roles in protein behaviour. Amyloid fibril formation is well-studied due to its role in neurodegenerative diseases and characterized by refolding of the protein into predominantly β-sheet form. However, much less is known about the assembly of proteins into other types of supramolecular structures. Using cryo-electron microscopy at a resolution of 1.97 Å, we show that a triple-mutant of the anti-microbial peptide plectasin, PPI42, assembles into helical non-amyloid fibrils. The in vitro anti-microbial activity was determined and shown to be enhanced compared to the wildtype. Plectasin contains a cysteine-stabilised α-helix-β-sheet structure, which remains intact upon fibril formation. Two protofilaments form a right-handed protein fibril. The fibril formation is reversible and follows sigmoidal kinetics with a pH- and concentration dependent equilibrium between soluble monomer and protein fibril. This high-resolution structure reveals that α/β proteins can natively assemble into fibrils.

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Primary Citation of related structures