7O7F image
Deposition Date 2021-04-13
Release Date 2021-06-30
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7O7F
Title:
Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
3.15 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(i) subunit alpha-1
Gene (Uniprot):GNAI1
Chain IDs:A
Chain Length:354
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Chain IDs:B
Chain Length:340
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:C-C chemokine receptor type 5
Gene (Uniprot):CCR5
Chain IDs:C
Chain Length:372
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab antibody fragment light chain
Chain IDs:G (auth: F)
Chain Length:217
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(T) subunit gamma-T1
Gene (Uniprot):GNGT1
Chain IDs:D (auth: G)
Chain Length:74
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Fab antibody fragment heavy chain
Chain IDs:F (auth: H)
Chain Length:221
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:C-C motif chemokine 5
Gene (Uniprot):CCL5
Chain IDs:E (auth: I)
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist.
Sci Adv 7 ? ? (2021)
PMID: 34134983 DOI: 10.1126/sciadv.abg8685

Abstact

The human CC chemokine receptor 5 (CCR5) is a G protein-coupled receptor (GPCR) that plays a major role in inflammation and is involved in cancer, HIV, and COVID-19. Despite its importance as a drug target, the molecular activation mechanism of CCR5, i.e., how chemokine agonists transduce the activation signal through the receptor, is yet unknown. Here, we report the cryo-EM structure of wild-type CCR5 in an active conformation bound to the chemokine super-agonist [6P4]CCL5 and the heterotrimeric Gi protein. The structure provides the rationale for the sequence-activity relation of agonist and antagonist chemokines. The N terminus of agonist chemokines pushes onto specific structural motifs at the bottom of the orthosteric pocket that activate the canonical GPCR microswitch network. This activation mechanism differs substantially from other CC chemokine receptors that bind chemokines with shorter N termini in a shallow binding mode involving unique sequence signatures and a specialized activation mechanism.

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Primary Citation of related structures