7O0A image
Deposition Date 2021-03-26
Release Date 2021-08-18
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7O0A
Keywords:
Title:
Bdellovibrio bacteriovorus PGI in P1211 spacegroup
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.74 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate isomerase
Gene (Uniprot):pgi
Chain IDs:A, B, C, D, E (auth: F), F (auth: G), G (auth: H), H (auth: E)
Chain Length:428
Number of Molecules:8
Biological Source:Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100)
Primary Citation
Bdellovibrio bacteriovorus phosphoglucose isomerase structures reveal novel rigidity in the active site of a selected subset of enzymes upon substrate binding.
Open Biology 11 210098 210098 (2021)
PMID: 34375548 DOI: 10.1098/rsob.210098

Abstact

Glycolysis and gluconeogenesis are central pathways of metabolism across all domains of life. A prominent enzyme in these pathways is phosphoglucose isomerase (PGI), which mediates the interconversion of glucose-6-phosphate and fructose-6-phosphate. The predatory bacterium Bdellovibrio bacteriovorus leads a complex life cycle, switching between intraperiplasmic replicative and extracellular 'hunter' attack-phase stages. Passage through this complex life cycle involves different metabolic states. Here we present the unliganded and substrate-bound structures of the B. bacteriovorus PGI, solved to 1.74 Å and 1.67 Å, respectively. These structures reveal that an induced-fit conformational change within the active site is not a prerequisite for the binding of substrates in some PGIs. Crucially, we suggest a phenylalanine residue, conserved across most PGI enzymes but substituted for glycine in B. bacteriovorus and other select organisms, is central to the induced-fit mode of substrate recognition for PGIs. This enzyme also represents the smallest conventional PGI characterized to date and probably represents the minimal requirements for a functional PGI.

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Primary Citation of related structures