7NZO image
Entry Detail
PDB ID:
7NZO
Keywords:
Title:
D-lyxose isomerasefrom the hyperthermophilic archaeon Thermofilum sp
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-03-24
Release Date:
2021-10-13
Method Details:
Experimental Method:
Resolution:
1.67 Å
R-Value Free:
0.21
R-Value Work:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:D-lyxose/D-mannose family sugar isomerase
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:204
Number of Molecules:2
Biological Source:Thermofilum sp. ex4484_79
Primary Citation
Biochemical and Structural Characterisation of a Novel D-Lyxose Isomerase From the Hyperthermophilic Archaeon Thermofilum sp.
Front Bioeng Biotechnol 9 711487 711487 (2021)
PMID: 34422783 DOI: 10.3389/fbioe.2021.711487

Abstact

A novel D-lyxose isomerase has been identified within the genome of a hyperthermophilic archaeon belonging to the Thermofilum species. The enzyme has been cloned and over-expressed in Escherichia coli and biochemically characterised. This enzyme differs from other enzymes of this class in that it is highly specific for the substrate D-lyxose, showing less than 2% activity towards mannose and other substrates reported for lyxose isomerases. This is the most thermoactive and thermostable lyxose isomerase reported to date, showing activity above 95°C and retaining 60% of its activity after 60 min incubation at 80°C. This lyxose isomerase is stable in the presence of 50% (v/v) of solvents ethanol, methanol, acetonitrile and DMSO. The crystal structure of the enzyme has been resolved to 1.4-1.7 A. resolution in the ligand-free form and in complexes with both of the slowly reacting sugar substrates mannose and fructose. This thermophilic lyxose isomerase is stabilised by a disulfide bond between the two monomers of the dimeric enzyme and increased hydrophobicity at the dimer interface. These overall properties of high substrate specificity, thermostability and solvent tolerance make this lyxose isomerase enzyme a good candidate for potential industrial applications.

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